Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 628 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT4G34440 534 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT2G18470 529 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT1G49270 520 / 5e-177 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 516 / 2e-175 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G52290 505 / 1e-173 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 478 / 3e-163 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G23540 446 / 2e-147 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 443 / 1e-146 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT4G32710 427 / 5e-145 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183000 [exp] 537 / 0 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 525 / 5e-180 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.009G115200 [exp] 523 / 2e-178 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 518 / 9e-177 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 510 / 1e-173 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 507 / 2e-173 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 480 / 8e-161 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 454 / 1e-150 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 438 / 1e-144 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023645 [exp] 668 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 663 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 641 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 509 / 3e-174 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 493 / 6e-171 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 500 / 1e-170 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10026335 [exp] 476 / 4e-163 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10042327 [exp] 481 / 4e-162 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 451 / 1e-151 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10003066 [exp] 436 / 7e-144 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G081300.1 pacid=42801003 polypeptide=Potri.018G081300.1.p locus=Potri.018G081300 ID=Potri.018G081300.1.v4.1 annot-version=v4.1 ATGTCAGCTCCTACTCCCACGTCGCCGCCGTCTAATACTACGGCTCCACCTCCTTCCACCACCACTCCACCCCCATCTACCCCACCCCCTACAACTCCTG CAACTCCTGCAGCCCCTCCACCCACTTCTCCACCACCTCCACCAACCCCTTCTGCCCAACCACCTGCCTCAACACCTCCACCACCACCAGCTGCCTCACC GCCATCCTCCTCACCACCCTCACCGCCATCCTCCTCACCACCGCCACCACCATCCTCCTCACCGTCTCCACCCTCGTCCCCCCCTCCGCCTTCATCCACT ACGCCGTCTACTCCCTCTCCGCCTTCATCCACTACACCGTCTACTCCCTCTCCGCCTTCATCCACTACGCCGTCGACTCCGACATCAAAGTCGAGTCCCC CACCGCCGACGAGCACGAGCACGCCGACAAGTGGGGGGTCGTCGGGAATTTCGACGGGGGTGGTAGTGGGGATAGCAATTGGGGGAGTGGCGATTCTGTT GGTAGTGAGTCTGTTTTTTATATGCTGTAATAAGAGGAAGAGAAGGAGACGTGATGACGAGGCCGCGTACTATGTGCCTCCTCCTCCTGGCCCGAAAGAT GACCCTTATGGTGGCAGACAACAATATTGGCAACAAAATGCTCCCCCACCACCTGATCGTGTTGTTGCAGCGATGCAAAACCCCCCTCCTCCACCACCCG TTGCATCAAGGCCATCACCTCCTCCTGAGCGTGTTGCAATGCCTCCACCACCTCCTCCACCACTTTTCATGAGCAGCAGTGGTGGCTCTGGCTCCAATTA TTCTGGTACGGAAAACCCATACCCACCACCTTCTCCAGGCATTGCTTTGGGTTTCTCTAAGAGCACATTTAGCTACGAGGAATTAGCAAGAGCAACAGAT GGATTCACAGATGCGAACCTCCTTGGTCAAGGAGGTTTTGGGTATGTGCACAGAGGAGTTCTTCCAAATGGGAAAGAAGTAGCTGTCAAGCAGCTAAAGG CAGGAAGTGGGCAGGGGGAGCGTGAATTTCAGGCAGAAGTTGAGATCATTAGCCGTGTGCATCACAAACATCTTGTTTCATTGGTTGGATACTGCATCAC CGGGGCTCATAGATTGCTTGTATATGAGTTTGTTCCGAATAACACTTTGGAGTTTCACTTGCATGGGAAGGGGCGACCCACCATGGATTGGCCTACGAGA CTAAAAATTGCATTGGGTTCTGCGAAAGGTCTTGCATACCTTCATGAAGATTGTCATCCTAAAATCATTCATCGTGACATCAAGGCATCTAATATACTTT TGGATTTCAAGTTTGAGGCAAAGGTTGCTGATTTTGGACTAGCAAAGATCTCTTCTGATGTCAATACTCATGTCTCCACTCGGGTGATGGGAACTTTTGG GTATCTGGCTCCAGAATATGCTTCAAGTGGAAAACTAACAGACAAATCAGATGTTTTCTCCTACGGGGTCATGCTTCTGGAATTGATCACTGGTCGTCGA CCTGTGGACTCAACTCAGTCTTTCATGGAGGACAGTTTGGTTGATTGGGCGAGGCCTTTACTGACTCGGGCTTTGGAAGATGGAAACTTTGATACCCTGG TTGATCAAAAGCTACAAAATAATTATGATCAAAATGAGATGGCTCGCATGGTTGCTTGTGCGGCTGCTTGTGTGCGTCATTCAGCTCGCCGTCGACCACG CACCAGTCAGGTAGTCAGAGCTTTGGAAGGAGATGTGTCTCTCTCTGATCTTAATGAAGGAATAAGACCTGGGAACAGCAGAGTTTATGGTTCATATGGC AGTTCAGACTATGACACCAGTCAATACAATGAGGACATGAAAAAATTCAGGAAGATGGCATTAGGAAGCCAGGAATATGGCGCAAGCAGTGAGTACAGTG GACCAACCAGTGAATATGGCTTGTACCCTTCTGGCTCGAGCAGCGAAGGCCAGAACACCCGCGAAATGGAAATGGGAAAGATGAAGAAGGCCAGTAAAGG TTTTAGTGGAAGTTCGTGA
AA sequence Show only first row Show all	>Potri.018G081300.1 pacid=42801003 polypeptide=Potri.018G081300.1.p locus=Potri.018G081300 ID=Potri.018G081300.1.v4.1 annot-version=v4.1 MSAPTPTSPPSNTTAPPPSTTTPPPSTPPPTTPATPAAPPPTSPPPPPTPSAQPPASTPPPPPAASPPSSSPPSPPSSSPPPPPSSSPSPPSSPPPPSST TPSTPSPPSSTTPSTPSPPSSTTPSTPTSKSSPPPPTSTSTPTSGGSSGISTGVVVGIAIGGVAILLVVSLFFICCNKRKRRRRDDEAAYYVPPPPGPKD DPYGGRQQYWQQNAPPPPDRVVAAMQNPPPPPPVASRPSPPPERVAMPPPPPPPLFMSSSGGSGSNYSGTENPYPPPSPGIALGFSKSTFSYEELARATD GFTDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGAHRLLVYEFVPNNTLEFHLHGKGRPTMDWPTR LKIALGSAKGLAYLHEDCHPKIIHRDIKASNILLDFKFEAKVADFGLAKISSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRR PVDSTQSFMEDSLVDWARPLLTRALEDGNFDTLVDQKLQNNYDQNEMARMVACAAACVRHSARRRPRTSQVVRALEGDVSLSDLNEGIRPGNSRVYGSYG SSDYDTSQYNEDMKKFRKMALGSQEYGASSEYSGPTSEYGLYPSGSSSEGQNTREMEMGKMKKASKGFSGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.018G081300 [exp]	0	1
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.008G038900 [exp]	2.82	0.8843
AT2G25800			Protein of unknown function (D...		Potri.006G238200 [exp]	4.58	0.8736
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.007G087200 [exp]	7.41	0.8890
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.002G079200 [exp]	16.30	0.8389
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.010G223300 [exp]	18.11	0.8112
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	18.22	0.8712
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	24.28	0.8455
AT1G67040			unknown protein		Potri.017G116000 [exp]	25.47	0.8442
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Potri.012G127800 [exp]	27.60	0.8529
AT2G21300			ATP binding microtubule motor ...		Potri.004G162800 [exp]	30.04	0.8515

Compare expression of checked genes

Potri.018G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.