Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19660 1569 / 0 ATSBT6.1 ,ATS1P SITE-1 protease (.1) AT1G20160 58 / 4e-08 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT1G04110 54 / 6e-07 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67090 51 / 5e-06 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 50 / 7e-06 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G03620 50 / 9e-06 Subtilisin-like serine endopeptidase family protein (.1) AT4G20850 48 / 3e-05 TPP2 tripeptidyl peptidase ii (.1) AT5G59810 48 / 3e-05 ATSBT5.4 Subtilase family protein (.1) AT1G20150 47 / 6e-05 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 46 / 0.0001 ARA12 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 66 / 1e-10 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 59 / 1e-08 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G018600 [exp] 57 / 8e-08 AT1G20160 889 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.003G118500 [exp] 55 / 3e-07 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G151900 [exp] 55 / 4e-07 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.014G026500 [exp] 53 / 1e-06 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 53 / 1e-06 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 50 / 1e-05 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.006G001600 [exp] 49 / 2e-05 AT5G59810 970 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023646 [exp] 1581 / 0 AT5G19660 1519 / 0.0 SITE-1 protease (.1) Lus10034918 [exp] 1060 / 0 AT5G19660 981 / 0.0 SITE-1 protease (.1) Lus10034919 [exp] 506 / 8e-171 AT5G19660 513 / 8e-174 SITE-1 protease (.1) Lus10006689 [exp] 70 / 6e-12 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 67 / 6e-11 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 59 / 2e-08 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006693 [exp] 59 / 2e-08 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10007036 [exp] 59 / 3e-08 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 58 / 3e-08 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10002243 [exp] 57 / 4e-08 AT1G04110 248 / 4e-75 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.018G081400.1 pacid=42801515 polypeptide=Potri.018G081400.1.p locus=Potri.018G081400 ID=Potri.018G081400.1.v4.1 annot-version=v4.1 ATGAAAATAAAAATCATGATCAGCCACCATAATCTCTCAACATTTCCATTCAAGTCCTCTTTCTTTTTAGCTCTCCTTTCCCTTTCTCTCTTCCATCTTT TCTCCAGCCCCTCTCCCATTTCCCAAACCCTAGCCCCCCAAAACTACATAGTCCGTTTCAAAGACTACGAGAAATCGGATCATCACCGTCGCTATTTAGA ATCGAGAGTCAAATCGGACGGCTGGAAATGGATCGAGAGGAGGAATCCGGCGATGGACTATGCCACGGATTTCGGAGTGTTGGCGATCCAGAAGGAGAGA GTGATTGGAGAGATTGAGAGGCTGGAGATGGTGAAAGATGTGAACTTGGATATTAGTTATACGAAAAGGGATTTGCTTGGTTTTGTTGATGGCGAGAAAC GCCCTGGCAAGATGTTTACTTCCATGTCATTTGACGCTGAAGAGAGTTATGCTGTAGCCCAGACTAGTAATTCTTCAATTCATTGGGGTCGCCAACTTTT GGGGCAGAAGTCACAGGTGACTTCCTTGTTCGGAGCAGATGTTCTTTGGTCAAAAGGGTTTACTGGTCATAAAGTCAAAATGGCTATTTTTGATACTGGA ATTCGAGCTGATCACCCGCATTTCCGCAAAATTAAGGAGCGAACAAACTGGACTAATGAAGATACTTTGAATGACAATCTTGGACATGGAACATTTGTTG CTGGTGTTATTGCTGGTCAAGATGCAGAGTGTCTTGGTTTTGCACCTGATGCAGAGATTTATGCCTTTCGCGTGTTTACAGATGCACAGGTATCTTACAC ATCATGGTTCCTTGATGCATTTAATTATGCTATTGCAATCAATATGGATGTGCTAAATTTGAGCATTGGTGGACCTGATTACTTGGATCTACCATTTGTT GAGAAGGTCTGGGAAATAACAGCTAATAACATCATTATGGTTTCTGCTATTGGAAATGATGGACCTCTTTATGGAACATTAAACAATCCAGCAGACCAAT GTGATGTTATCGGTGTTGGTGGCATAGATTACAATGATCACATAGCCCCATTTTCTTCGCGTGGCATGAGCACTTGGGAGATTCCTCATGGCTACGGTCG TGTGAAGCCCGATGTTGTTGCATATGGGCGGGAAATCATGGGATCCAAGATAAGCACTGGTTGTAAAAGTTTATCAGGGACTAGCGTGGCTAGTCCTGTG GTTGCTGGTGTGGTTTGCCTACTTGTCAGTGTTATTCCTGAAAGTGCTCGTAAGGACATTCTGAATCCAGCAAGCATGAAACAAGCTTTGGTTGAGGGGG CTGCTAAGCTTGCTGGTCCGAATATGTATGAGCAGGGTGCTGGAAGAGTTGATCTATTAGAATCATATGAAATCCTGAAGGGTTACCAACCTCGGGCAAG CATCTTTCCAAGTGTTCTTGATTTTACAGATTGCCCTTATTCCTGGCCCTTTTGTCGTCAGCCACTTTATGCAGGTGCTATGCCTGTTATGTTCAATGCC ACCATTCTGAATGGAATGGGTGTCATTGGCTATATTGAAAGTGCTCCAACATGGCATCCTGCAGAGGAAGAAGGAAATCTTCTAAGCATTCACTTTACTT ATTCAGAAGTTATCTGGCCTTGGACTGGTTATTTAGCATTGCACATGCAAATCAAGGAAGAAGGTGCGCAGTTCTCTGGAGAGATTGAGGGTAATGTAAC TCTTAGGGTGTTTAGTCCTCCATCTCCAGGTGAGAAGGGCCCTCGAAGCAGCACTTGTGTGCTTCAACTGAAACTAAAAGTAGTTCCCACTCCACCAAGA CAGAAGCGTGTTTTGTGGGATCAATTTCACAACATTAAATACCCTCCTGGATATATTCCAAGAGACTCTTTGGATGTTCGCAATGATATCCTTGACTGGC ATGGGGATCACCTGCATACAAATTTTCATATCATGTTCAACATGTTACGAGATGCTGGGTACTATGTTGAAACTCTTGGTTCGCCTTTCACATGCTTTGA TGCTCGCCAATATGGGACACTGCTGCTAGTGGATCTTGAGGATGAATACTTTCAAGAAGAAATCGAGAAACTGAGAGATGATGTTATCAGTACCGGATTG GGATTAGCTGTTTTTGCAGAATGGTATAACATGGATACAATGGTGAAAATGCGATTCTTTGATGATAATACGAGGAGCTGGTGGACTCCTGTTACTGGAG GTGCGAATATCCCAGCATTGAATGATCTTCTGGCCCCATTTGGGATCGCTTTTGGGGATAAGATTCTGAATGGGGATTTTTCCATTGATGGAGAGCAAAG TCGATACGCATCTGGAACTGATATTGTGAGGTTTCCAAGAGGTGGGTATACTCACGGTTTTCCCTTCCTGGATAGCTCAGAAAGTGGGGCCACCCAAAAT GTGTTGACTTCTGGCACGACCAAGGCAGACTCTTCAATTCTTGGCCTTGTAGAGGTGGGACAAGGTCGCATAGCAGTTTATGGAGACTCCAACTGTCTGG ATAGCAGCCATATGGTCACTAACTGTTACTGGCTCCTGAAGAAAATACTGGATTTCACTAGCAGGAACATTAGAGATCCATTGCTGTTCCCAGATTCAGC TAAAAAAGATGCGGCCCTATTTGTAGATGACAATCAATTACCTACTCGCCGTACTGATGTAAATTTCTCATCGTATTCTGCTGTTGTGGGGAAGGATTTA ATCTGCAAGAGTGACTCCAGATTTGAAGTATGGGGAACTAAGGGATACAATCTACATGTTAGGGGAAGGAATAGAAGACTTCCAGGCTACCCTCTTATTG ATCTGGGGAGGGGTTTGAATTCTACCATTGATACTTCCAATTTGAGGCGTCCAAAGGACACTCAGAAAAATAAGGTTGTCTCGTTGGGAAACAGAACTTG GGGCATGCTCTCCAGGGATGAGGCTGATGTACCGGTGCTAGTAGCTAGTCATTGGCTCCTACCTGCAGCAATAGCAATTACTGGCCTTTTGTTGTTGAGC ATTTGGCACATTCGGCAAAGGAGGCGAAGGAGGAGGAGAGGGTCTGGTTCCGGCCGACTGGGCAATTTATAG
AA sequence Show only first row Show all	>Potri.018G081400.1 pacid=42801515 polypeptide=Potri.018G081400.1.p locus=Potri.018G081400 ID=Potri.018G081400.1.v4.1 annot-version=v4.1 MKIKIMISHHNLSTFPFKSSFFLALLSLSLFHLFSSPSPISQTLAPQNYIVRFKDYEKSDHHRRYLESRVKSDGWKWIERRNPAMDYATDFGVLAIQKER VIGEIERLEMVKDVNLDISYTKRDLLGFVDGEKRPGKMFTSMSFDAEESYAVAQTSNSSIHWGRQLLGQKSQVTSLFGADVLWSKGFTGHKVKMAIFDTG IRADHPHFRKIKERTNWTNEDTLNDNLGHGTFVAGVIAGQDAECLGFAPDAEIYAFRVFTDAQVSYTSWFLDAFNYAIAINMDVLNLSIGGPDYLDLPFV EKVWEITANNIIMVSAIGNDGPLYGTLNNPADQCDVIGVGGIDYNDHIAPFSSRGMSTWEIPHGYGRVKPDVVAYGREIMGSKISTGCKSLSGTSVASPV VAGVVCLLVSVIPESARKDILNPASMKQALVEGAAKLAGPNMYEQGAGRVDLLESYEILKGYQPRASIFPSVLDFTDCPYSWPFCRQPLYAGAMPVMFNA TILNGMGVIGYIESAPTWHPAEEEGNLLSIHFTYSEVIWPWTGYLALHMQIKEEGAQFSGEIEGNVTLRVFSPPSPGEKGPRSSTCVLQLKLKVVPTPPR QKRVLWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPFTCFDARQYGTLLLVDLEDEYFQEEIEKLRDDVISTGL GLAVFAEWYNMDTMVKMRFFDDNTRSWWTPVTGGANIPALNDLLAPFGIAFGDKILNGDFSIDGEQSRYASGTDIVRFPRGGYTHGFPFLDSSESGATQN VLTSGTTKADSSILGLVEVGQGRIAVYGDSNCLDSSHMVTNCYWLLKKILDFTSRNIRDPLLFPDSAKKDAALFVDDNQLPTRRTDVNFSSYSAVVGKDL ICKSDSRFEVWGTKGYNLHVRGRNRRLPGYPLIDLGRGLNSTIDTSNLRRPKDTQKNKVVSLGNRTWGMLSRDEADVPVLVASHWLLPAAIAITGLLLLS IWHIRQRRRRRRRGSGSGRLGNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	0	1
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	3.46	0.8429	SCD1.2
AT3G48860			unknown protein		Potri.015G104600 [exp]	3.87	0.8270
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	5.91	0.8109
AT3G04490			unknown protein		Potri.019G019100 [exp]	7.74	0.8290
AT5G58100			unknown protein		Potri.018G150600 [exp]	8.48	0.7766
AT5G58510			unknown protein		Potri.009G076000 [exp]	8.48	0.8078
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	9.48	0.8072
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	9.79	0.8221
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.001G068900 [exp]	10.24	0.8186
AT1G12470			zinc ion binding (.1)		Potri.013G147600 [exp]	10.39	0.7922

Compare expression of checked genes

Potri.018G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.