Plant FIBer expression Database

Potri.018G081500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24560 694 / 0 RSY3 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034921
[exp]
813 / 0 AT3G24560 676 / 0.0 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Lus10023647
[exp]
347 / 7e-113 AT3G24560 332 / 7e-108 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Lus10035028
[exp]
175 / 4e-51 AT3G24560 171 / 2e-50 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01171 ATP_bind_3 PP-loop family
Representative CDS sequence
>Potri.018G081500.2 pacid=42801443 polypeptide=Potri.018G081500.2.p locus=Potri.018G081500 ID=Potri.018G081500.2.v4.1 annot-version=v4.1
ATGGCGCGAGGGCTCATCCTGACAACGCAAGCGAGAGCCACCACCACTTCCTTCACAACAAGACTTTCAGTTTCAAAACCCAAATGCAAAAACCCTCTTC
CTTATCGTCTCCATCTACCTTCCCGTGTATCCTCAACTCGCTTCTTTTGCTGCAAATGTTCGGTTTCCCAAGACCCAATCGTCATCACCGAATACAAGCA
GTCTTTCTCTCAGCGAATGGCTATGGCTGGACTCAAGCCTCACCACCGTATTGCTATAGGAGTATCCGGTGGCCCTGATAGCATGGCACTTTGTTTCCTA
ACTGCTGGTTGGAAAACTGATGGTGCTAATGCTGTTGGCAAAAGTGATGATGGTTTTATTAATGGGATTTTGGGGGTAATTGTTGATCATGGGCTGCGAG
AAGAGAGTAATGAGGAGGCACATATTGTTTCTAGTCGAGTTACTGAAATGGGAATCAGATGTGAGATTGCAAAGTGTAGTTGGTTGGATGGGAAGCCTAA
ACAAGGTCACTTGCTAGAAGAGGCTCGAGAGAAGAGGTATGAAGTGTTCCAAAATGTTTGCACTAAACATCAGATTGAAGTGTTGCTTATTGCACATCAT
GCGGATGACCAGGCCGAGTTGTTCATTCTTAGACTATCTCGCAACAGTGGCGTGCTTGGACTTGCCGGCATGGCATTTACTTCGCAAATGTTCTCCAAAA
GCACCCATCTTTACCGTGAAGGTTCAAAGAACAAAGGGATACTAATAGTGAGACCACTCTTGCATTTTTCTAAAGAAATTTTGTACAAGATATGTCAAGA
GTCTGGCCAGGATTGGGTGGAAGATCCAACAAATCAAAACACAGTATATGCTCGGAATAGGATTCGAATGTCATTAGGAAATTTGTCATCATATACCTTC
CAGTCTGAACTACAAGGTGTGATTTCTGCCTGTCGAAGAACACGTGCATATGTTGACCAAATTTGTAATAATTTGATAAATCAGGCTGTGACCATCATAG
ATCAGCATGGGTATGCCATCATCGATTTAGAGATTCTTAATCCATCAAAAGTTACAGATATATGCCTGTCAAAGTTTGTTGCGTTGATCTTGCAGTATGT
CTCTCAGAGGAACAGGCCCATTAGAGGAAGTACTTCAAAATTGTTGTTACACTACATTCGCACTGTCCCATGCAAGACCTCCTTTACAGCTGCTGGATGT
TACCTTTGTCCAGCTCCTCGGTCTAGGGGGACAAAAATCCTTGTTTGTTGTTCTGTTGATTGTCCTCTGAATTCAAAAATGGAATTGATTTACCCTTTTT
TAAATGGAGAACAAAAGCATTATTTCCGAAATGAGTTGGAGCAAATTATAGCTGATGGAAAATCATATTCAAATCATTTTGTTCCAGATGCATCAGATGT
GCATTTTTTAGATGCATCTGAATCAGTCATAAGTGAAGCCAAAACACTCAACATTATCAGTGAGTCAACCTATAGAGACATTCTTTTACTGAAGAGGGAA
GAAATCAAACATTTCAAGCATAAAGTTGAAGATAAGGTGGACTATAAGTCAAAAAATAAGGTTGAATCTATCATTGCATCCCCAAGTGAACTACTTCAGC
CTGGAAAAGCATGTTATTTCATGAACAGGTTCTGGATCACATGGAAACTGAGCAACCATGTTTCTGTCGGTGAAGGGACAGAAAATTGTGTTGCGGATTT
AGGAGGGGAAAGTCAGGAATGCCATAGCTGTTCTTGCAGGATTGGTCATGACAAGGTTGCTGAGGTGCGGCGCATGAGCGAATCTGATTGGCTTTATCTT
GCTAAGTTGTCAAAGTGCCCAAGTTTGGATAACTTGCAACAGCAAAAAGTTCTTTCATCCAGTACAATGGAGCAAATATCAGAGAAGAGAAGCCTGCATT
TGGAAAATCTGGAGCTATCAGCACAAAAAGCTCTTGAAGTGTTGAAATCGATACCAGTTGCTGCTAGAAGAAGCCTCCCAGTCCTAGTCAATCATCAAGG
ACTTTTACTTAGCATCCCGAGTATTGGCTTCAAGCACTGCCCTTGTTTGATGGTGTCTTGCGAATTCAAGCCAATAGTGCCACTTGGGGGAGGTCACAGC
TCATTCATGTAA
AA sequence
>Potri.018G081500.2 pacid=42801443 polypeptide=Potri.018G081500.2.p locus=Potri.018G081500 ID=Potri.018G081500.2.v4.1 annot-version=v4.1
MARGLILTTQARATTTSFTTRLSVSKPKCKNPLPYRLHLPSRVSSTRFFCCKCSVSQDPIVITEYKQSFSQRMAMAGLKPHHRIAIGVSGGPDSMALCFL
TAGWKTDGANAVGKSDDGFINGILGVIVDHGLREESNEEAHIVSSRVTEMGIRCEIAKCSWLDGKPKQGHLLEEAREKRYEVFQNVCTKHQIEVLLIAHH
ADDQAELFILRLSRNSGVLGLAGMAFTSQMFSKSTHLYREGSKNKGILIVRPLLHFSKEILYKICQESGQDWVEDPTNQNTVYARNRIRMSLGNLSSYTF
QSELQGVISACRRTRAYVDQICNNLINQAVTIIDQHGYAIIDLEILNPSKVTDICLSKFVALILQYVSQRNRPIRGSTSKLLLHYIRTVPCKTSFTAAGC
YLCPAPRSRGTKILVCCSVDCPLNSKMELIYPFLNGEQKHYFRNELEQIIADGKSYSNHFVPDASDVHFLDASESVISEAKTLNIISESTYRDILLLKRE
EIKHFKHKVEDKVDYKSKNKVESIIASPSELLQPGKACYFMNRFWITWKLSNHVSVGEGTENCVADLGGESQECHSCSCRIGHDKVAEVRRMSESDWLYL
AKLSKCPSLDNLQQQKVLSSSTMEQISEKRSLHLENLELSAQKALEVLKSIPVAARRSLPVLVNHQGLLLSIPSIGFKHCPCLMVSCEFKPIVPLGGGHS
SFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24560 RSY3 RASPBERRY 3, Adenine nucleotid... Potri.018G081500
[exp]
0 1
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Potri.018G103700
[exp]
2.00 0.8547
AT1G56190 Phosphoglycerate kinase family... Potri.016G091800
[exp]
5.47 0.8056
AT4G16700 PSD1 phosphatidylserine decarboxyla... Potri.003G078300
[exp]
10.39 0.7633
AT1G56180 unknown protein Potri.010G171400
[exp]
10.58 0.8424
AT1G10510 EMB2004 embryo defective 2004, RNI-lik... Potri.008G193700
[exp]
11.22 0.8048
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
11.48 0.8304
Potri.004G206650
[exp]
17.02 0.7927
AT3G21175 GATA GATA24, TIFY2B,... ZIM LIKE 1, GATA TRANSCRIPTION... Potri.005G152500
[exp]
18.84 0.7502
AT4G26680 Tetratricopeptide repeat (TPR)... Potri.014G166001
[exp]
24.85 0.7368
AT2G31290 Ubiquitin carboxyl-terminal hy... Potri.005G191100
[exp]
27.98 0.7706

Potri.018G081500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.