Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21222 643 / 0 protein kinase family protein (.1) AT5G25630 557 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 233 / 3e-67 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12300 228 / 6e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 223 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 224 / 6e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 219 / 9e-63 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 218 / 1e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 218 / 2e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 219 / 4e-62 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037200 [exp] 710 / 0 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 240 / 7e-71 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 240 / 4e-70 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 231 / 1e-67 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 228 / 4e-66 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 233 / 8e-66 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 223 / 1e-64 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046100 [exp] 223 / 4e-64 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 220 / 1e-63 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023650 [exp] 783 / 0 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10034924 [exp] 737 / 0 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10014245 [exp] 227 / 3e-66 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 217 / 2e-62 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013283 [exp] 215 / 3e-61 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036020 [exp] 213 / 2e-59 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008593 [exp] 207 / 1e-58 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 206 / 2e-58 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10007468 [exp] 206 / 1e-57 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038974 [exp] 205 / 5e-57 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.018G081700.7 pacid=42801877 polypeptide=Potri.018G081700.7.p locus=Potri.018G081700 ID=Potri.018G081700.7.v4.1 annot-version=v4.1 ATGGAAGATGGGACAATCACAAGCGGAAAGAGGCTTGAAGCACCTGCAGTTATGGAATCAAAACTGCTAGAGAACGACCAATTTCAACCGGTTTCATCAT TTGTGGATTCACAAGTTAAATCCTGCTGCCCTATCTGTTTGGGCAACAATCGCTGCAGGATAGTCCGCTCTAGAACAAAACTGATGAATGTTTTGATTGG GAAAGGGAAGCCTCGAGAAGCCCATTCTATTTTCAACAGTTTAATGGACGAGGGACACAAGCCAACTCTTATAACATACACAACCCTTGTAGCGGCCTTG ACTCGGCAAAAACTCTTCAAGTCTATACTTCGACTCATCTCTAAAGTGGAAGAAAATGGCATGAAGCCTGATTCTATACTCTTCAATTCCATAATCAATG CCTTTTCTGAATCTGGAAATATGAAGGAAGCCATGAAACTATTTCGGAAAATGAAGGAGAGTGGATGTAAACCAACAACAAGCACATTTAACACCCTTAT CAAAGGATATGGGAATGCTGGCAAGACTGAAGAAGCTTTGAAATTACTGGAGTTTTTACAGGATGGAGGTGTGAAACCAAATCAAAGGACATATAATATT CTTGTTAGAGCTTGGTGTAACAAGGAAAACATGGAAGAAGCTTGGAACATGGTGTACAAGATGGTGGCATCTGGCATGCAACCAGATGCTGTCACATACA ACACACTAGCAAGGGCTTATGCAGAGAAAGGAGAGACAATTAGGGCTGAAGAAATGATACTGGAAATGCTGAACAGGAGAGTGACACCCAACGAGCGTAC TTGCAGCATCATTGTGAATGGCTACTGCAAAGAAGGTAATATGGTTGACGCTTCAAGGTTTGTGTTCAGAATGAAGGAGCTTGGAGTGCTTCCTAATCTC TTTGTTTTTAATTCTCTCATCAAAGGATTTCTAGATACCATGGATACTGAAGGAGTTGATGAGGTGCTGACATTAATGGAAGAAAATGGGGTAAGGCCAG ATGTTGTAACATTTAGCACAATCATGAATGCATGGAGTTCAGCTGGGCGTATGGACAAATGCAAAGAGATCTTCAATGACATGGTGAAGGCTGAAATAGA ACCTGACATTCATGCGTTCAGTATCCTTGCAAAGGGTTATGTGCGAGCTGGAGAACCTGAAAAGGCAGAGTCAATCCTGACTTCTATGAGAAAATATGGC TTGCATCCAAATGTTGTAATCTGCACCACCGTTATAAGTGGATGGTGCAGCGCAGGAAAAATGGAGCATGCAATGAAGGTTTATGAGAAAATGTGTGAAA TTGGCGTTTCCCCCAACTTGAAAACCTATGAGACCTTGATATGGGGATATGGTGAAGCAAAGCAGCCATTGAAAGCAGAAGAACTGCTGCAAGTTATGGA AGAGAAGGGTGTCTTTCCTAAGAAGGGGACCATGCAGCTCATAGCAGATGCATGGCGTGCCATTGGTTTGCTGAGTGAATCTGAGAGAATTATAGAAAAT GACGAAGATCCGGAGGTCAATGTAGATAGAAAGAAAGATGATGTGCCCGTTGATAGACTGGAAAGCATTTATAAGGACCAAAACCGTGGTGCTTCTTATT CTAAGCTGTTACAGATGCCTGGGGAAGCTACTACCAATCAAAATGGATCATCTTCTGTTAAAATAAGAACCCAGATGATTCTTAAGAATTACAGGTCTTC GTCTGAGTCTTCATGGACAGGTACCAACTCTGTCTTGCTCACTCGTCTGTTTGTGTTTGGGGCACAACCGCAAATCAAAAGCAGAAGGCAGCACCAAAGT CTGGTCGGCATTTGTGAAAAAGTCGCAAGCAGAATCCTGTGCATAAATTGA
AA sequence Show only first row Show all	>Potri.018G081700.7 pacid=42801877 polypeptide=Potri.018G081700.7.p locus=Potri.018G081700 ID=Potri.018G081700.7.v4.1 annot-version=v4.1 MEDGTITSGKRLEAPAVMESKLLENDQFQPVSSFVDSQVKSCCPICLGNNRCRIVRSRTKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAAL TRQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNI LVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNL FVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYG LHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIGLLSESERIIEN DEDPEVNVDRKKDDVPVDRLESIYKDQNRGASYSKLLQMPGEATTNQNGSSSVKIRTQMILKNYRSSSESSWTGTNSVLLTRLFVFGAQPQIKSRRQHQS LVGICEKVASRILCIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.001G399600 [exp]	1.41	0.9394	Pt-SPA3.1
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Potri.016G109400 [exp]	2.23	0.9273
AT3G17609	bZIP	HYH	HY5-homolog (.1.2.3.4)		Potri.010G004200 [exp]	5.83	0.9367	HY5.1
AT3G12685			Acid phosphatase/vanadium-depe...		Potri.010G176100 [exp]	6.00	0.9281
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232700 [exp]	8.71	0.8691
AT4G12060			Double Clp-N motif protein (.1...		Potri.001G115500 [exp]	12.04	0.8949
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	12.96	0.9020
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.018G015700 [exp]	13.85	0.9275
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	16.70	0.9168
AT1G55340			Protein of unknown function (D...		Potri.013G057600 [exp]	21.11	0.8300

Compare expression of checked genes

Potri.018G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.