Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24630 99 / 3e-21 unknown protein AT5G42710 50 / 9e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261700 [exp] 68 / 3e-11 AT5G42710 185 / 4e-48 unknown protein Potri.014G185300 [exp] 65 / 3e-10 AT5G42710 195 / 2e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011100 [exp] 201 / 8e-54 AT3G24630 66 / 7e-11 unknown protein Lus10043221 [exp] 139 / 2e-33 AT3G24630 82 / 8e-16 unknown protein Lus10010806 [exp] 65 / 2e-10 AT5G42710 179 / 3e-47 unknown protein Lus10016315 [exp] 61 / 5e-09 AT5G42710 179 / 4e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.018G082300.2 pacid=42801202 polypeptide=Potri.018G082300.2.p locus=Potri.018G082300 ID=Potri.018G082300.2.v4.1 annot-version=v4.1 ATGTACAGATCATTTGTCACATGTGATGATCCGAAAGGAGTTGTAGAATGCGGGACAATTAGAAAATCCAAGAGTGGTTCCCACAAAATGGAGCATGAGA TCATAAGCCATAAAGCACAGAAGAACTCAAAAGCAGATTTGACAGTCATAGCTGAAAAGAAGGAGCTGGTCTCTAAAGGGATTGTGGAAGAGTATCGCAC TCCATCTTCATTTCAACTCCTGGAGGTCTCAAGAGGAGCTCAGAAGCTGAACCAGACGATCAACTCGTGGTCTAAGGGGTTGAGCTCTGATGGCCAGTCT AAAGATATTGCAAAAGATTTGTTGAAAGGGGCTCTTGATATGCAGGAGTCTCTCCTCATGCTTGGTAAGCTGCAAGAAGCCTCGCATTATATGGCCCAGC TGAAAAGGCAGAAGGAGAAGCTGAAAAGGCAGAAGGAGAAGCTAAAAATTAATGAAGTCGGGGCTGAAATGATGAATTCACATCAATTTGGCGATCTACA TTGCCAGACAGGATTTCAAAAGCCACTGCTTTCTGCTGATGGTTCTTCCAATGATTACATTGATGAGCTTAAGAAAGCAATCACAGATAGCCTTGGCAGG CATAATTTGCTCCCAAACAGAACCACCCGAGAGAAGACGTCCAAAGAAAGGAGAAAGAGGGACTCAGCTCCAGATGTCCCCTCCACAAGCTCAAGCCAGT CATCAGTGGCTCAGTCTAGCAGCAGTCATTCTACTCGCTCCATATCTACAGCAGCTCCTCCAAGGAAGGAAAACAGTCCAAATCTGATTGCCAAGCTAAT GGGTCTGGAAGACATGCCATCAAAACCATTGCAAAAACATCCACAAAAACAGTTGGATGTTGAGACTGATTTAAGCCGGAGGAGGCCAAGGCCAGTCTTT GATATTGAAATGCCAAAGGTAAGGAAGCCTCAACCCTTAATGCATAAGGTACGTCCAGAGCAAAGAGCACTGAAGGATATTCTTGAAACCATGCAATTTA AAGGACTCTTGAAATGCCATTCAGTCAAAGAGCTCAAGTCCTGGTCCCATCACTCCAGAGAAACGAATACCAACCGGAGGTCTAGTAATTATATTTCACC TATTGTACTAATAAAACCTGGTGTGTCATGCTTCGAATCAAAAGAGGTGCCTGCACCAATGGTTTGGGAAATGGGAGCCTTGAAAGCTGAATTGATGCCA CGAAAAGTGAAGTTAAAAAAAGGACCCGAACCTGATACTAGATCAGTAGACTACAAAGAGGGAACTTATAGCACTAGCAAAATGCTGCGTAAAACAGAAG TTGATGAGCCTACAAACAGAAGGCTGGGCCAGGAGGAAGGAACTACGGACCGCAGAGAGGTGGTTGTGAAACCAGAAGAAAAAGAAATCAAAACAGTTGT CCAGGAAGAAGTTGCAGTTCGTGAAAACAAAGGGAACGCAGAGCCGGAACCCGAAGAGACTCTAATAAAAATGCTAGGCAAAGAACGAGTAGAGGACCGC AAATATGTAGTTCCAAGAGCAGAAGAGCAAAGAATTAAGACAAAATTGAAGGGTTCGTCCAAGTTGAAAGCTAGCTGTCCTGTAACTAACCAACAACAGA AAAAAGAGACAGCTGTGAAAAAGGTAAATAAGACTCAGAGGGTGGATGCTGATAGCAGGAAACGGATAGAGGCAGAGGTTGTGAAGCCTAAAAATGTATC AAGATCTCAAGAACAAGCCAAGGTGATCTCAACGAACACAAGAATTGAACATGGATCAATGACTACAAAGACTCAAATTACTCAACAGAGCAGTACGAAT CAAAAATCCATCTTGAAACACACAACAAAAACCACAGTTCACGGCCCTAAAGATCAGAAGCGGAAGATAGTTGCTGAGCCTACAGAAGAAAAACCAACTA ATAAGGAACTAGGATGCAAAGAAGACAAGAAGAATGGCCACAAATGTGATGCTGATCCTGTTTCCAAAGTAACGAATACCCCACTTGCTGGTCAACCATC TACAGAGGAGGAAGCAAATGTCTTAAAATTTCATAATGAAGAACATTGCAGTGACAGCCAGAGTTCTCCCTGCAATCATACATTGGTGACCTCTGAACAC GAGGAAGTTGCGAAATCTCCTGAAGAAGCCAACAATGATATGGGTCTCATAGGAGGAGATGGAGAAAGTTCCAAAAATGGAATCCAATTGAATGCTTTAC TTTTGAGCAGTCCATTGTTTCTCACTCATGCAGAGGAGCTTTTCGATCTCAATATGAATAGCCCCGAGACCTTTCCAACATCTGGCATCTGCGATTATCG AATAGCCAGCATGGAACTTTCTTTAGATTATGCTAATGAATACATTGAACGTAGAAGCTGTGTAGATTCACAAACAAGGCATCCGCTGTTACAAACGTGT ACAGGAGATTCAAGACTTAATCTTTCTTTAGAGAAGTTGGTGGAGGAAATTGTTAATGGAGCCAAGACTCTTACTAGTTATTGCAAGCTTGGTTTTTACA ACCTTCCAGCTGATAGTCTGTATGGGATACTGGAAAACGATATAAGATGTGGATCAGTAGCGAGTGGAACATGGGATTTGGGGTGGAGGAACGGATTTTC TGTGGATGAAGCTGAGCAAACTGTGAATGACGTAGAGAAGTTGCTTATAAGTGAGTTGATTGAGGAGATGTTTACATAA
AA sequence Show only first row Show all	>Potri.018G082300.2 pacid=42801202 polypeptide=Potri.018G082300.2.p locus=Potri.018G082300 ID=Potri.018G082300.2.v4.1 annot-version=v4.1 MYRSFVTCDDPKGVVECGTIRKSKSGSHKMEHEIISHKAQKNSKADLTVIAEKKELVSKGIVEEYRTPSSFQLLEVSRGAQKLNQTINSWSKGLSSDGQS KDIAKDLLKGALDMQESLLMLGKLQEASHYMAQLKRQKEKLKRQKEKLKINEVGAEMMNSHQFGDLHCQTGFQKPLLSADGSSNDYIDELKKAITDSLGR HNLLPNRTTREKTSKERRKRDSAPDVPSTSSSQSSVAQSSSSHSTRSISTAAPPRKENSPNLIAKLMGLEDMPSKPLQKHPQKQLDVETDLSRRRPRPVF DIEMPKVRKPQPLMHKVRPEQRALKDILETMQFKGLLKCHSVKELKSWSHHSRETNTNRRSSNYISPIVLIKPGVSCFESKEVPAPMVWEMGALKAELMP RKVKLKKGPEPDTRSVDYKEGTYSTSKMLRKTEVDEPTNRRLGQEEGTTDRREVVVKPEEKEIKTVVQEEVAVRENKGNAEPEPEETLIKMLGKERVEDR KYVVPRAEEQRIKTKLKGSSKLKASCPVTNQQQKKETAVKKVNKTQRVDADSRKRIEAEVVKPKNVSRSQEQAKVISTNTRIEHGSMTTKTQITQQSSTN QKSILKHTTKTTVHGPKDQKRKIVAEPTEEKPTNKELGCKEDKKNGHKCDADPVSKVTNTPLAGQPSTEEEANVLKFHNEEHCSDSQSSPCNHTLVTSEH EEVAKSPEEANNDMGLIGGDGESSKNGIQLNALLLSSPLFLTHAEELFDLNMNSPETFPTSGICDYRIASMELSLDYANEYIERRSCVDSQTRHPLLQTC TGDSRLNLSLEKLVEEIVNGAKTLTSYCKLGFYNLPADSLYGILENDIRCGSVASGTWDLGWRNGFSVDEAEQTVNDVEKLLISELIEEMFT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24630			unknown protein		Potri.018G082300 [exp]	0	1
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	1.41	0.9153
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	3.16	0.8733	Pt-XTH3.1
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	3.46	0.8933
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	3.87	0.8926
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	5.47	0.8702	ATSEB1.1
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.004G175500 [exp]	6.24	0.8369
AT1G45688			unknown protein		Potri.014G026800 [exp]	6.32	0.8474
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	6.48	0.8539	Pt-ATCSLC12.1
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	7.48	0.8752
AT4G23020			unknown protein		Potri.001G110900 [exp]	7.74	0.8350

Compare expression of checked genes

Potri.018G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.