Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ASP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19550 736 / 0 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 728 / 0 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT1G62800 650 / 0 ASP4 aspartate aminotransferase 4 (.1.2) AT4G31990 475 / 9e-167 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT2G30970 428 / 1e-148 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241600 [exp] 748 / 0 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G241500 [exp] 661 / 0 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G260200 [exp] 490 / 2e-172 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 486 / 6e-171 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.014G143300 [exp] 412 / 3e-142 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 384 / 4e-131 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043222 [exp] 753 / 0 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 749 / 0 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 730 / 0 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 489 / 3e-172 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10020720 [exp] 423 / 1e-146 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10029796 [exp] 422 / 2e-146 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 346 / 2e-116 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10001753 [exp] 338 / 3e-113 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10000181 [exp] 207 / 3e-63 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2) Lus10010748 [exp] 43 / 0.0005 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.018G082500.1 pacid=42801203 polypeptide=Potri.018G082500.1.p locus=Potri.018G082500 ID=Potri.018G082500.1.v4.1 annot-version=v4.1 ATGGAGTCTTCTTCTGTGTTTGCTAACATTGTTCGAGCTCCTGAAGATCCCATTCTCGGAGTGACAGTTGCATATAACAAGGATAGCAGCCCACATAAGT TGAATTTGGGTGTTGGTGCTTACCGAACCGAGGAAGGGAAGCCTCTGGTTTTGAATGTGGTGAGAAGAGCAGAGCAGATGTTAGTGAATGACAGCTCTCG GGTCAAAGAATATCTTCCCATTGTTGGACTTGCCGATTTTAACAAATTGAGTGCCAAGCTTATTTTTGGTGCTGATAGTCCAGCCATACAAGAGAACAGA GTGACTACTGTCCAGTGCTTGTCCGGTACTGGTTCTCTGAGGGTTGGGGCTGAGTTTCTTGCTAGGCATTACCACCAACTCGTGATTTACATCCCGAATC CCACGTGGGGAAATCATACCAAAATCTTCGGTCTTGCAGGGCTGTCTGTGAAGGCTTACCGTTACTATGATCCATCAACACGTGGGCTGGATTTCCAAGG CTTGCTAGAGGATCTTGGAGCTGCACCATCAGGATCTATAGTGCTTCTTCATGCATGTGCTCATAACCCCACTGGTGTTGACCCAACCATTGAACAATGG GAGCAGATCAGACAGTTGATGAGATCAAAAGGGCTGCTACCTTTCTTTGACAGTGCTTACCAGGGTTTTGCTAGTGGTAGCCTAGATGCAGATGCAGGGT CTGTTCGCATGTTCGTTGCAGATGGCGGTGAATGTCTTGCAGCTCAGAGTTATGCAAAAAACATGGGCCTCTATGGGGAACGTGTTGGTGCTCTCAGCAT AGTTTGCAAGAAAGCAGATGTTGCAAGTAGGGTTGAGAGCCAGTTGAAGCTTGTGATACGGCCCATGTATTCTAATCCACCTATTCATGGTGCATCAATT GTGGCCACCATTCTCAAAGACAGGGATATGTACAATGAATGGACTGTTGAGCTGAAAGCAATGGCTGACCGGATTATAAGCATGCGCCAACAACTATTTG ATGCTTTATCTGCTAGAGGCACTCCTGGTGACTGGAGTCACATTATCAAGCAAATTGGAATGTTTACCTTCACTGGCTTGAACACTGAACAAGTTGCCTT CATGACCAAAGAGTATCACATATACATGACATCTGATGGGAGGATAAGCATGGCAGGTCTTAGTTCCAGGACAGTCCCTCATCTGACAGATGCCATACAT GCTGCTGTTACCCGTGTTGGCTAA
AA sequence Show only first row Show all	>Potri.018G082500.1 pacid=42801203 polypeptide=Potri.018G082500.1.p locus=Potri.018G082500 ID=Potri.018G082500.1.v4.1 annot-version=v4.1 MESSSVFANIVRAPEDPILGVTVAYNKDSSPHKLNLGVGAYRTEEGKPLVLNVVRRAEQMLVNDSSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENR VTTVQCLSGTGSLRVGAEFLARHYHQLVIYIPNPTWGNHTKIFGLAGLSVKAYRYYDPSTRGLDFQGLLEDLGAAPSGSIVLLHACAHNPTGVDPTIEQW EQIRQLMRSKGLLPFFDSAYQGFASGSLDADAGSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKKADVASRVESQLKLVIRPMYSNPPIHGASI VATILKDRDMYNEWTVELKAMADRIISMRQQLFDALSARGTPGDWSHIIKQIGMFTFTGLNTEQVAFMTKEYHIYMTSDGRISMAGLSSRTVPHLTDAIH AAVTRVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19550		AAT2, ASP2	aspartate aminotransferase 2 (...		Potri.018G082500 [exp]	0	1	Pt-ASP4.1
AT3G10220		EMB2804	EMBRYO DEFECTIVE 2804, tubulin...		Potri.006G041400 [exp]	12.40	0.8831
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.018G137500 [exp]	15.65	0.8666
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.007G076900 [exp]	20.49	0.8667
AT2G18990		TXND9	thioredoxin domain-containing ...		Potri.009G092700 [exp]	21.07	0.8738
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370000 [exp]	23.36	0.8589
AT1G09270		IMPA-4	importin alpha isoform 4 (.1.2...		Potri.013G007300 [exp]	27.71	0.8550
AT1G72020			unknown protein		Potri.013G110600 [exp]	32.17	0.8481
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Potri.008G123200 [exp]	34.20	0.8349
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	39.52	0.8138	Pt-GDI.1
AT1G12390			Cornichon family protein (.1)		Potri.001G116100 [exp]	43.63	0.7999

Compare expression of checked genes

Potri.018G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.