Plant FIBer expression Database

Potri.018G082800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023655
[exp]
39 / 7e-05 AT1G55205 83 / 3e-22 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G082800.2 pacid=42802166 polypeptide=Potri.018G082800.2.p locus=Potri.018G082800 ID=Potri.018G082800.2.v4.1 annot-version=v4.1
ATGGCTTCCACGAAGGTAGTCTCCAGGTTATCAACAAGGTTACAGCCTTTCCTTTTCAAGCTCAACAAGAAATCTTTATCTGCTGAGCTCTCTTCACTGA
AATCCAGCTCTCTTCCAACTCCGGTTTCTGTTCCTGCAACAACAAGACGCCTCTCTCGCTCCTCAAGATTACCACTGCAATTGAGTTGCGTCGAATCGAT
GTTGCCATTGCACAGCGCGGTAGCATCAGCGAAGTTGATTTCGAGCTTGTCTAGCGAATCTGACTCCTGGGCTTTAGTGCCTCAAGGTGTCTCGATGCCT
TTATGA
AA sequence
>Potri.018G082800.2 pacid=42802166 polypeptide=Potri.018G082800.2.p locus=Potri.018G082800 ID=Potri.018G082800.2.v4.1 annot-version=v4.1
MASTKVVSRLSTRLQPFLFKLNKKSLSAELSSLKSSSLPTPVSVPATTRRLSRSSRLPLQLSCVESMLPLHSAVASAKLISSLSSESDSWALVPQGVSMP
L

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13674 unknown protein Potri.018G082800
[exp]
0 1
AT3G59650 mitochondrial ribosomal protei... Potri.013G126200
[exp]
3.16 0.8691
AT3G04400 EMB2171 embryo defective 2171, Ribosom... Potri.010G066400
[exp]
4.12 0.8798 Pt-RPL23.6
AT5G52220 unknown protein Potri.015G140200
[exp]
4.24 0.8517
AT1G20580 Small nuclear ribonucleoprotei... Potri.002G010200
[exp]
5.74 0.8427
AT4G33865 Ribosomal protein S14p/S29e fa... Potri.009G090000
[exp]
8.71 0.8666
AT2G18400 ribosomal protein L6 family pr... Potri.007G024900
[exp]
9.74 0.8260
AT5G52370 unknown protein Potri.009G040100
[exp]
9.89 0.8362
AT3G06960 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4,... Potri.010G002800
[exp]
10.00 0.7251
AT5G64140 RPS28 ribosomal protein S28 (.1) Potri.010G245400
[exp]
10.39 0.8410 Pt-RPS28.1
AT2G18110 Translation elongation factor... Potri.012G096400
[exp]
10.72 0.8111 Pt-EEF1.2

Potri.018G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.