Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29010 1094 / 0 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G06860 827 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT3G15290 154 / 1e-41 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT5G43280 62 / 2e-10 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16800 58 / 7e-09 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G60550 56 / 5e-08 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G011900 [exp] 859 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 838 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.001G398600 [exp] 155 / 2e-42 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.001G153300 [exp] 67 / 1e-11 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 63 / 1e-10 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.003G080800 [exp] 55 / 5e-08 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G329900 [exp] 50 / 3e-06 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043224 [exp] 1195 / 0 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10011102 [exp] 1166 / 0 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10037495 [exp] 847 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006502 [exp] 472 / 5e-162 AT3G06860 670 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 380 / 2e-126 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10020828 [exp] 168 / 9e-47 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 162 / 9e-45 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10011336 [exp] 68 / 5e-12 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10010994 [exp] 67 / 1e-11 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10002583 [exp] 65 / 4e-11 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF00725 [poplar] [flax] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [poplar] [flax] NADP_Rossmann PF02737 [poplar] [flax] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.018G082900.4 pacid=42801742 polypeptide=Potri.018G082900.4.p locus=Potri.018G082900 ID=Potri.018G082900.4.v4.1 annot-version=v4.1 ATGGCTAAGCCTCACGTCACCATGGAGGTTGGAAACGACGGCGTTGCTGTGGTGACCCTTATCAATCCTCCTGTCAACGCCTTAGCTATTCCAATCATTG CGGGATTGAAAGAGAAGTTTGATGAAGCCACCCGGAGAAATGACGTCAAGGCTCTAGTTCTTACTGGCAAGGGTGGAAGGTTTTCCGGTGGATTTGACAT CAATGTTTTCCAGAAAGTTCATGCGACAGGAGATATTTCATTGATGCCTGATGTATCTGTTGAGCTTGTGGTCAACACTATTGAAGATTGTAAAAAACCT GTTGTTGCTGCCGTGGAAGGACTAGCACTTGGAGGGGGCTTGGAATTGGCAATGGGATGCCATGCGCGTATTGCTGCTCCAAAAACTCAACTTGGTTTGC CAGAGCTGACACTTGGAGTTATTCCTGGATTTGGAGGTACACAACGTCTTCCAAGGCTTTTGGGGCTGTCGAAGGCCATTGAAATTATGCTGTTATCCAA ACCAATCATGTCTGAAGAGGGGAAGAAGCTAGGTCTAATTGATGCTATTGTGCCTTCTCAAGAACTGCTGAAAGTATCTCGACAATGGGCTTTAGACATC TCAGAGAGGCGCAAACCATGGCTGCGTTCTCTTCATAGGACAGACAAAATTGGCTCGCTGTCTGAAGCACGTGAGGTACTGAAAGCTGCTAGACAACAAG CGAAGAAAATTGCCCCAAATGTGCCGCAGCATCAAGCATTGCTTGATGTAATGGAGGAAGGCATCATTCATGGAGGATATAATGGTGTTCTAAAGGAGGC AAAAGTCTTCAAGGAGTTAGTTTTGACAGAAACTTCAAAAGGTCTTGTGCATGTCTTTTTTGCCCAGCGTATGACGTCAAAGATACCTAAAGTCACTGAT GTTGGGCTCAAACCACGACATATAAAGAAAGTTGCTGTTATTGGTGGTGGTCTAATGGGTTCTGGCATAGCTACTGCTTTAATTGTGAGCAACATACACG TTGTTCTTAAAGAAATCAACTCTGAATATCTTCAGAAGGGAACAAAAACAATAGAAGCAAATGTTCGAAGCTTAGTGACAAGAGGAAAGTTGACACGGGA TAAGGCAGATAAAGCCCTCTCAATGCTCAAAGGTGCATTGGACTACTCAGACTTCAAAGATGTGGATATGGTCATAGAGGCAGTAATTGAAAGTGTTCCT TTGAAACAAAAAATTTTCAGTGAGATTGAAAAAATCTGTCCTCCTCACTGCATTTTGGCGACAAATACATCTACCATTGACCTCAACTTGGTTGGAGAAA AGACCAGCTCTCAAGATCGCATTATTGGTGCCCACTTTTTCAGTCCTGCTCACATAATGCCTCTTCTGGAGATTGTACGGACTGAGAAGACTTCTGCCCA AGCAATTCTTGATCTCATGACCGTTGGTAAAACCATAAAGAAAGTTCCAGTTGTTGTGGGTAACTGCACTGGCTTTGCAGTCAATCGAGCATTCTTCCCA TACACCCAAAGCGCACTGATTTTGGTTCATTTAGGAGTGGACGTGTTCAGGATTGACAAGCTGATCAGCAGTTTTGGCCTCCCAATGGGTCCTTACCAGC TTCAGGATTTATCTGGATATGGAGTTGCCCTTGCAGTTGGGAAAGAATTTGCTAATGCATTCCCTGATCGTACATTCCAGTCTCCATTAATTGATCTTCT AGTAAAAAGTGGAAGAAATGGTAAAACCAATGGAAAAGGATACTACATATATGAGAAAGGAAGCAAGCCAAGGCCTGATCCATCAGTCCTACCAATTATT GAGGAGTCGAGACGGCTCGCAAATATTATGCCTAATGGAAAGCCTATAAATATCACCGACAAAGAGATAGTGGAGATGGTTCTCTTTCCAGTGGTGAATG AGGCATGCCGTGTTCTGGATGAGGGCGTTGTGGTTCGAGCTTCGGACCTCGACACCGCATCTGTTCTCGGAATGAGCTTCCCATCTTATCGTGGTGGCAT CGTCTTTTGGGCTGACCTGGTTGGGCCTAAACATGTATATGATAGCCTGAAGAAATGGTCTCAAAGATTTGGCGATTTCTACAAACCATCGAAGTTCTTG GAAGAAAGAGCAACAGGAGGCATACCATTGAGTGCGCCTGCTTCATCGTCTTCAGGGTCAAGGTCACGCATGTAG
AA sequence Show only first row Show all	>Potri.018G082900.4 pacid=42801742 polypeptide=Potri.018G082900.4.p locus=Potri.018G082900 ID=Potri.018G082900.4.v4.1 annot-version=v4.1 MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGRFSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKP VVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLIDAIVPSQELLKVSRQWALDI SERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPNVPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVTRGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVP LKQKIFSEIEKICPPHCILATNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIKKVPVVVGNCTGFAVNRAFFP YTQSALILVHLGVDVFRIDKLISSFGLPMGPYQLQDLSGYGVALAVGKEFANAFPDRTFQSPLIDLLVKSGRNGKTNGKGYYIYEKGSKPRPDPSVLPII EESRRLANIMPNGKPINITDKEIVEMVLFPVVNEACRVLDEGVVVRASDLDTASVLGMSFPSYRGGIVFWADLVGPKHVYDSLKKWSQRFGDFYKPSKFL EERATGGIPLSAPASSSSGSRSRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Potri.018G082900 [exp]	0	1
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.006G108800 [exp]	1.41	0.7886	Pt-VMVSR.1
AT3G62650			unknown protein		Potri.014G124900 [exp]	2.82	0.7545
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G013900 [exp]	2.82	0.7884
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	6.48	0.7741
					Potri.012G127000 [exp]	8.00	0.7436
					Potri.010G183951 [exp]	10.48	0.7536
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	12.00	0.7316
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.004G160400 [exp]	18.46	0.7346
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.009G121300 [exp]	22.36	0.6577	Pt-RD19.2
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G011200 [exp]	25.09	0.7243

Compare expression of checked genes

Potri.018G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.