Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 412 / 1e-139 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 392 / 5e-132 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 246 / 7e-77 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 119 / 6e-30 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 108 / 4e-25 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 106 / 2e-24 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 105 / 3e-24 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 102 / 3e-23 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160400 [exp] 535 / 0 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 303 / 1e-96 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.001G184800 [exp] 226 / 1e-68 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.010G083400 [exp] 111 / 4e-26 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 108 / 4e-25 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 107 / 1e-24 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 103 / 2e-23 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G030000 [exp] 99 / 4e-22 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 86 / 9e-18 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023656 [exp] 456 / 4e-157 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 405 / 7e-137 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 360 / 6e-119 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 253 / 7e-78 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 241 / 6e-73 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 103 / 2e-23 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 103 / 2e-23 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 90 / 7e-19 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 89 / 1e-18 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [poplar] [flax] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Potri.018G083000.3 pacid=42801911 polypeptide=Potri.018G083000.3.p locus=Potri.018G083000 ID=Potri.018G083000.3.v4.1 annot-version=v4.1 ATGGGGGAAAGTGAGGGAAGTGAATTCCCTCCAAAAAAGCAGCAGCAACAATCGGAGAATGCATATTTTCAGACCAAGAAGCTAGCCAGACAGCTCGATT TTACACAGGGTGTACTTCCTGACCATACTCAATCGCAGCCGTCGCCACTGCAGAAGCCGCCTCTCTTGGTTTCCCCGGCGGCTGCGCAGAGCCAGCCCCA GCCCCACCCACAATCCCAACTGCAACTGCAGCCACAGGTGGCTGAGATTCAAGTGGTACCGCAACAGCAGACGCAGCAGCAGCAGCAGCCAGCCAGGGCT GTGAAACCAGAATCACCAAAATCAATACCAATACCGAATACTGAATTGAAAGATGGTACTCCAAAGAAGCAAAGACAGTGTAACTGTAAACACTCACGGT GCTTAAAGCTTTACTGTGAGTGTTTTGCCTCTGGAACATACTGTGATGGGTGCAATTGTGTTAATTGTTATAACAATGTTGAAAATGAAGCTGCCAGGCG GGAAGCTGTTGAAGCTACTTTAGAGCGTAATCCAAATGCATTCAGGCCAAAAATTGCGAGCAGCCCACATGGAACACGGGATAGTCGGGAAGAAACTGGG GACGGATTGGTGTTTGTAAAGCACAATAAGGGATGCCACTGCAAGAAATCTGGATGTCTCAAAAAGTACTGTGAATGCTTCCAAGCCAATATTCTTTGTT CTGAAAATTGTAAATGCATGGACTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAGGCACTCTTTCATGGTGACCACGGCAACAACATGGCATATATTCA ACAGGCTGCGAATGCTGCAATAACAGGGGCTATTGGATCATCTGGTTATGCTTCCCCTCCAGTATCTAGGAAGAGAAAAGGTCAGGAGCTTTTCTTTGGG CATACAGTCAAGGATCAATCATTTGACAGGCTTGGACATTTTCAACAGGGAAGCCATACCAGGCCTCCTGCACCCTCCTCTTCATTGCCCTCCAATCCCA TTGCTCGTGCCGGTAATGCTATAACATTGGGCCCTTCAAAAATCACATACAGGTCTCTCTTGGCAGACATCATCCAACCACAAGACTTAAAAGAACTTTG CTCAGTTTTGGTGGTTCTGTCCGGAGAAGCTGCCAAGACGTTTTCAGACCAAAGAAATTCAATGGAAAAGCGAGTAGAAGATCAAAGAGAAACTTTGCTT GCTTCATCTACTCAAGAAAGGTTGCAGAGCCACAAGGAATCCGATGCTGATAAATTGTTGCTAATGATTGTTCTAGTGCAAACCATGCTGATAAAGTAG
AA sequence Show only first row Show all	>Potri.018G083000.3 pacid=42801911 polypeptide=Potri.018G083000.3.p locus=Potri.018G083000 ID=Potri.018G083000.3.v4.1 annot-version=v4.1 MGESEGSEFPPKKQQQQSENAYFQTKKLARQLDFTQGVLPDHTQSQPSPLQKPPLLVSPAAAQSQPQPHPQSQLQLQPQVAEIQVVPQQQTQQQQQPARA VKPESPKSIPIPNTELKDGTPKKQRQCNCKHSRCLKLYCECFASGTYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREETG DGLVFVKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMAYIQQAANAAITGAIGSSGYASPPVSRKRKGQELFFG HTVKDQSFDRLGHFQQGSHTRPPAPSSSLPSNPIARAGNAITLGPSKITYRSLLADIIQPQDLKELCSVLVVLSGEAAKTFSDQRNSMEKRVEDQRETLL ASSTQERLQSHKESDADKLLLMIVLVQTMLIK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G083000 [exp]	0	1
AT1G26580			unknown protein		Potri.010G159700 [exp]	1.00	0.8885
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.009G129700 [exp]	2.23	0.8667
AT5G63120			P-loop containing nucleoside t...		Potri.015G083000 [exp]	3.00	0.8787
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	3.46	0.8633
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	4.47	0.8769
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	5.91	0.8599
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	7.61	0.8839
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	9.38	0.8556
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	10.09	0.8402
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	10.58	0.8438

Compare expression of checked genes

Potri.018G083000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.