Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28990 124 / 2e-32 RNA-binding protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160500 [exp] 246 / 9e-79 AT4G28990 96 / 9e-22 RNA-binding protein-related (.1.2) Potri.009G076600 [exp] 44 / 0.0002 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.001G281300 [exp] 42 / 0.0006 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023657 [exp] 150 / 1e-42 AT4G28990 122 / 4e-32 RNA-binding protein-related (.1.2) Lus10023658 [exp] 52 / 1e-08 ND 48 / 5e-08 Lus10034929 [exp] 51 / 4e-08 AT4G28990 59 / 2e-11 RNA-binding protein-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G083100.1 pacid=42800326 polypeptide=Potri.018G083100.1.p locus=Potri.018G083100 ID=Potri.018G083100.1.v4.1 annot-version=v4.1 ATGGGGTCCAGAGACAAGGACCAAACGACACCGCATCACCAGCCTCTCCTTAGCAGCCTCGTTGTACGTCCATCCGTCAGAGACGGCGGTGATGGCGCAG GAGGTGGAGGCCTCACAGGTGGTAGCGATTACGAGCCTGGAGAGTTCCTCCGTGAACCCCCATCCTATTCTCGCCCCGAACGATACTCTGATGATCCTGG ATATAGGCTTCGTGCAGGTTCTGGTTCTCCTGTACGTCGTAGGGATGCAGATCACAGATACAATTCTGATTTTGATAATTCAGGGGCAGATCACAGATAC AATTCTGATTTTGATAATTCAGGGGGCCCATCTCGGGGTCGTGATTTTAGCAACAGGAAGTATCATGGTAGATTTCAAGATTCTTCACCCCCTTATGCTC GAGGAAGAGGTTTTGATGGGCCTGGACTTGGTCCAGGACCTCATAGAGGGGAGGACATGGGTATGGGTAGGAATAATCCAAATGTACGCCCAAGGGAAGG CGACTGGATCTGCACAGATCCTTTATGTGGCAACCTGAACTTTGCAAGGAGAGATTTCTGTAACAATTGCAAGAGGCCTCGCTATAGATCTGGAGGGAGT CCTCGGCGGGGTTATCCTGGCCCCCCACCTCTGCATGCTCCTCCAAGACACTTTCCTGGTCTTTCATTGGATCTCTCTCCAGGCAGGACTATGAATGGCT ATAGGTCTCCTCCTCGAGATTGGGCAAGAGACAGACCCAGAGATTATGGGTCTGGTGGTCCACCTCCCAGGCAAGGGGGCCGGTTTGCGTTCTCTGACCA AGACATGCGGAGAGATCGATCTGATTATGCAGATGATGAATACAGGGGGAGGAACAAATTTGACAGGCCAATGCCAATGGATTGGGGTCATAATGACCAT GGAAGGGATAGCTTTTTCCATGAAAGGAAAGGGTTTGAGAGACAACCACCCTCTCCACCTCTACCTCCGCCTTCACTTCCTCAACGTGGGAGATGGGGCC GTAAAGGGAGAGACAGGAGCAGATCGCCAATTAGCACCACCAAAAGAGTTCATAATATGTACATGGAGCAGGGGCGGCGAGATGATCGGCATCGTGTTGG GCGAGGCAGAATGAGAGATGTGTATTGA
AA sequence Show only first row Show all	>Potri.018G083100.1 pacid=42800326 polypeptide=Potri.018G083100.1.p locus=Potri.018G083100 ID=Potri.018G083100.1.v4.1 annot-version=v4.1 MGSRDKDQTTPHHQPLLSSLVVRPSVRDGGDGAGGGGLTGGSDYEPGEFLREPPSYSRPERYSDDPGYRLRAGSGSPVRRRDADHRYNSDFDNSGADHRY NSDFDNSGGPSRGRDFSNRKYHGRFQDSSPPYARGRGFDGPGLGPGPHRGEDMGMGRNNPNVRPREGDWICTDPLCGNLNFARRDFCNNCKRPRYRSGGS PRRGYPGPPPLHAPPRHFPGLSLDLSPGRTMNGYRSPPRDWARDRPRDYGSGGPPPRQGGRFAFSDQDMRRDRSDYADDEYRGRNKFDRPMPMDWGHNDH GRDSFFHERKGFERQPPSPPLPPPSLPQRGRWGRKGRDRSRSPISTTKRVHNMYMEQGRRDDRHRVGRGRMRDVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	0	1
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	2.44	0.8519	SGR2.1
					Potri.008G119000 [exp]	3.46	0.8382
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	3.74	0.8096
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	6.40	0.7898
AT4G23270		CRK19	cysteine-rich RLK (RECEPTOR-li...		Potri.011G035850 [exp]	7.74	0.8128
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	9.38	0.8256
AT3G53390			Transducin/WD40 repeat-like su...		Potri.016G088800 [exp]	10.53	0.7933
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103132 [exp]	13.71	0.7783
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G054900 [exp]	15.49	0.8428
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	16.97	0.7627

Compare expression of checked genes

Potri.018G083100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.