Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67300 709 / 0 Major facilitator superfamily protein (.1.2) AT1G79820 644 / 0 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT1G05030 367 / 4e-122 Major facilitator superfamily protein (.1) AT5G16150 366 / 1e-121 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G75220 186 / 6e-53 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1) AT1G19450 183 / 6e-52 Major facilitator superfamily protein (.1) AT1G54730 176 / 1e-49 Major facilitator superfamily protein (.1.2.3) AT5G17010 176 / 3e-49 Major facilitator superfamily protein (.1.2.3.4) AT2G48020 166 / 6e-46 Major facilitator superfamily protein (.1.2) AT3G03090 166 / 1e-45 ATVGT1 vacuolar glucose transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185300 [exp] 692 / 0 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.014G060800 [exp] 374 / 7e-125 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.004G097800 [exp] 369 / 5e-122 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 280 / 2e-90 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.007G024300 [exp] 180 / 7e-51 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 178 / 5e-50 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 174 / 3e-48 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.007G126800 [exp] 171 / 3e-47 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 169 / 8e-47 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034930 [exp] 642 / 0 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035862 [exp] 367 / 2e-125 AT1G79820 385 / 2e-133 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10028486 [exp] 365 / 5e-121 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10009158 [exp] 362 / 2e-119 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 360 / 3e-119 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10033568 [exp] 347 / 7e-114 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10025800 [exp] 337 / 7e-114 AT1G79820 357 / 2e-122 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Lus10017610 [exp] 340 / 9e-111 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10030010 [exp] 336 / 4e-110 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10025565 [exp] 172 / 1e-47 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G083200.2 pacid=42802020 polypeptide=Potri.018G083200.2.p locus=Potri.018G083200 ID=Potri.018G083200.2.v4.1 annot-version=v4.1 ATGCGGGGACATCGAACGGGAGAGTACTCTATGTACAAGAGAATGTCATCTAGAGATTTCACTGTTGCTGCTGATGTAGAGGATAATTCTGTTGTTTCAC AGAGCATTCCGGATCAAGAAATTACAAATCCTTCATGGAGGTTGTCATTTCCACATGTACTAGCCGCAACCATATCAGCCTTCCTATTTGGCTATCATCT TGGTGTGGTAAATGAACCACTGGAGAGCATTTCTTTGGATCTTGGATTCAATGGAAACACCTTGGCAGAAGGTCTTGTGGTTAGCACATGTTTGGGTGGT GCGTTGATCGGATCTTTATTCAGTGGTTGGATTGCCGACGGGATTGGCCGTCGTAGGGCTTTTCAGTTGTGTGCTTTGCCCATGATTGTTGGCGCTTCTA TAAGTGCAACAACCAAAACTTTGGCTGGTATGCTTTTAGGAAGGTTGCTAGTGGGAACTGGAATGGGCCTTGGTCCCCCTGTTTCATCTCTCTATGTGAC AGAGGTTTCTCCATCCTTTGTGAGGGGAACTTATGGAAGTTTCATCCAGATTGCAACATGTCTTGGACTTATGGCAGCTTTGTTTATTGGAATCCCTGTC AGAGAAATAGCAGGCTGGTGGCGCATATGTTTTTGGGTTTCTACAGTTCCTGCTGGAATACTTGCTCTTTCCATGATGTTTTGTGCAGAGAGTCCACATT GGCTGTACAAGCAAGGAAGAACTGCTGAAGCTGAAGCTGAGTTTGAGAGGCTTTTAGGTGGAGCACATGTCAAATTTGCAATGCAAGAGTTATCCAAATT AGACAGAGGGGATGATTCAGATGATGTGCATTTCTCAGAATTGCTTTATGGTCGATGTTTTAGAGTTGTTTTTATTGGGTCAACCCTATTTGCTTTACAA CAGCTATCTGGCATAAACGCTATATTTTATTTCTCTTCAACTGTGTTTAAAAATGCGGGAGTTCCATCAGACCTAGCGAATGTCTTTGTTGGAATAGCAA ATTTATCAGGATCTGTTATTGCAATGGTTTTGATGGATAAAATGGGAAGGAAGGTGCTGCTTCTGTGGAGTTTCTCTGGAATGGCAGTATCCATGGGCCT TCAAGTTGTTGCAGCAAGTTCTAATATGTTGGGCTCTGGAACTTTGTACCTATCTGTTGGTGGCATGCTAATGTTTGTCTTCACTTTTGCTATCGGAGCT GGTCCAGTTCCAGGCCTCCTCCTACCAGAAATCTTCCCCAGTCGAATCAGGGCAAAAGCTATGGCAGTCTGCATGTCTGTGCACTGGGTAATAAATTTCT TTGTTGGCTTGCTGTTCTTGCGTTTGCTGGAGCAACTCGGACCACGGCTCTTGTACACTATCTTTGGTACATTTTGCTTGATGGCAGTGGTTTTTGTGAA GAGGAATGTCATGGAAACCAAAGGAAAATCACTCCAAGAAATTGAGATAGCCCTGCTTCCCCCTGAATGA
AA sequence Show only first row Show all	>Potri.018G083200.2 pacid=42802020 polypeptide=Potri.018G083200.2.p locus=Potri.018G083200 ID=Potri.018G083200.2.v4.1 annot-version=v4.1 MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISAFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGG ALIGSLFSGWIADGIGRRRAFQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGSFIQIATCLGLMAALFIGIPV REIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGRTAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFALQ QLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFSGMAVSMGLQVVAASSNMLGSGTLYLSVGGMLMFVFTFAIGA GPVPGLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPRLLYTIFGTFCLMAVVFVKRNVMETKGKSLQEIEIALLPPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67300			Major facilitator superfamily ...		Potri.018G083200 [exp]	0	1
AT5G65290			LMBR1-like membrane protein (....		Potri.007G096900 [exp]	2.00	0.7635
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	6.48	0.7522	SEC.1
AT1G13570			F-box/RNI-like superfamily pro...		Potri.010G134200 [exp]	7.81	0.7942
AT1G24030			Protein kinase superfamily pro...		Potri.008G145900 [exp]	9.16	0.7749
AT1G36980			unknown protein		Potri.002G089300 [exp]	9.53	0.7499
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Potri.010G092300 [exp]	19.28	0.7388
AT4G38040			Exostosin family protein (.1)		Potri.007G117600 [exp]	19.77	0.7295
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	22.22	0.7362
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.002G036200 [exp]	22.58	0.7343
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	23.97	0.7163

Compare expression of checked genes

Potri.018G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.