Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CAK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28980 642 / 0 CAK1AT, CDKF;1 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) AT3G48750 125 / 2e-32 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G73690 121 / 4e-30 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 120 / 7e-30 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G66750 115 / 2e-28 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT5G10270 117 / 4e-28 CDKC;1 cyclin-dependent kinase C;1 (.1) AT1G20930 110 / 5e-27 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G67580 114 / 1e-26 CDKG;2 Protein kinase superfamily protein (.1.2) AT5G64960 112 / 2e-26 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT2G38620 108 / 2e-26 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133500 [exp] 115 / 5e-29 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.001G088000 [exp] 118 / 1e-28 AT5G63610 681 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.003G142900 [exp] 117 / 3e-28 AT5G63610 676 / 0.0 HUA ENHANCER 3, cyclin-dependent kinase E;1 (.1) Potri.016G142800 [exp] 111 / 3e-27 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.012G052100 [exp] 112 / 4e-27 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.006G024600 [exp] 114 / 6e-27 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.014G079100 [exp] 112 / 7e-27 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.010G056900 [exp] 114 / 8e-27 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G204400 [exp] 112 / 3e-26 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023659 [exp] 611 / 0 AT4G28980 555 / 0.0 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Lus10034931 [exp] 383 / 2e-131 AT4G28980 333 / 4e-112 CYCLIN-DEPENDENT KINASE F;1, CDK-activating kinase 1AT (.1.2) Lus10042588 [exp] 116 / 1e-27 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 115 / 1e-27 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10022043 [exp] 117 / 2e-27 AT5G10270 710 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 115 / 2e-27 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10040530 [exp] 112 / 8e-27 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10015816 [exp] 113 / 2e-26 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017371 [exp] 110 / 2e-26 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10036995 [exp] 113 / 3e-26 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G083300.2 pacid=42801663 polypeptide=Potri.018G083300.2.p locus=Potri.018G083300 ID=Potri.018G083300.2.v4.1 annot-version=v4.1 ATGGACCGATCTCCGCCGCCCGCAAAGAGCTGGAGCATCCACACCCGACCCGAAATCATATCCAAATACGAAATCCAAGAGCGAATTGGCTCCGGCGCCT ACTCCGACGTGTACAAAGCCAGGCGTCACTCCGACAATCTCACAGTGGCTCTCAAAGAAATCCACGACTACCAGTCTGCATCTAGAGAAATCGAGGCATT GCAGGTCCTCCAGAATTGTCCAAACGTCGTCGTTTTGCACGAGTATTTTTGGAGAGAAGACGAGGACGCTGTGCTTGTTTTGGAGTTCTTGAGAACTGAC TTGGCTGCTGTTATTAAGCAAGGGGAAAAGAGGGATGATGGTGTTGGCGTTAGTGTTGGAGAAGTTAAGAGATGGATGGTTCAGATTTTATGCGGGGTTG ATGCGTGTCATCGGAATATGATCGTGCATCGTGATTTGAAACCTAGTAATTTGTTGGTTTCTGACGATGGGGTTCTTAAGTTGGCTGATTTTGGCCAGGC GAGGATACTCATGGATCCTGGGTTCGTTGCAGCCGATGAGAACATTCAACCATATGAACAGAACCCATTATTTCAGGAACATGCTACTCCACCAGCTGAA GTTGTTCCTGAGATAGACAGCTCATCTCAAGAAGGACATAGAAATGAAAAGCAAGGTACGATTAGTAGAGAAGAATCATTTCGAGAGATGGGCAACTACA AGATTCAGGGTTCATTAGATGACATTGATAAGGAAATGAGTATTCGGGATGGAGATACTTCTTGTTTTGCAACTGGCACTGCAAGCGACTTAGGAGATGA TATGTTGAAGAGTTATTGTTCATATGAGGCTGAGGATGCTGAAAACGATGGGTGTGGTTCACTCACTTCATGTGTTGGAACACGGTGGTTCCGGGCTCCG GAACTGCTCTATGGATCCACAGACTATGGCCTGGAGGTTGATCTGTGGTCTTTGGGCTGTATTTTTGCTGAGCTTTTGACCCTCAAACCCCTCTTCCCAG GCACTTCTGATATAGATCAAATTAGCAGAATTTTCAGTGTCTTGGGAAATTTGACTGAGGAAGTCTGGCCAGGCTGTGTAAAACTTCCTGATTACGGAAC AATTTCTTTTGCCAAGGTGGAAAATCCCACTGGCATAGAAGCCTGCCTCCCTAATCATTCCCCTGGTGAAATCTCTCTGGTCAAGAAGCTTGTCTGCTAT GACCCAGCTAGTAGAGCTACAGCCATGGAATTGCTCCATGATGAGTACTTTAGCAAAGAGCCTCTTCCGGTTCCCTTCTCTGATCTCTGGGTTCCTTCAA CTAGTAGTGGGCAGGATGAGGATTCCCCTGGTCTGTGGCATGATTACAATGATAGGGAATCTGATTCTGATTTTGATGACTTCGGCCCCATGAGTGTCAA AACCACCTCGGATGGTTTCTCCATACAGTTTTCCTGA
AA sequence Show only first row Show all	>Potri.018G083300.2 pacid=42801663 polypeptide=Potri.018G083300.2.p locus=Potri.018G083300 ID=Potri.018G083300.2.v4.1 annot-version=v4.1 MDRSPPPAKSWSIHTRPEIISKYEIQERIGSGAYSDVYKARRHSDNLTVALKEIHDYQSASREIEALQVLQNCPNVVVLHEYFWREDEDAVLVLEFLRTD LAAVIKQGEKRDDGVGVSVGEVKRWMVQILCGVDACHRNMIVHRDLKPSNLLVSDDGVLKLADFGQARILMDPGFVAADENIQPYEQNPLFQEHATPPAE VVPEIDSSSQEGHRNEKQGTISREESFREMGNYKIQGSLDDIDKEMSIRDGDTSCFATGTASDLGDDMLKSYCSYEAEDAENDGCGSLTSCVGTRWFRAP ELLYGSTDYGLEVDLWSLGCIFAELLTLKPLFPGTSDIDQISRIFSVLGNLTEEVWPGCVKLPDYGTISFAKVENPTGIEACLPNHSPGEISLVKKLVCY DPASRATAMELLHDEYFSKEPLPVPFSDLWVPSTSSGQDEDSPGLWHDYNDRESDSDFDDFGPMSVKTTSDGFSIQFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Potri.018G083300 [exp]	0	1	Pt-CAK1.2
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	2.23	0.8950
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Potri.004G163000 [exp]	3.16	0.9089
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Potri.001G186700 [exp]	6.32	0.8701	TIP2.4
AT5G51960			unknown protein		Potri.008G044200 [exp]	8.71	0.9009
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.019G035500 [exp]	8.88	0.8408
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	14.49	0.8947
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Potri.012G066100 [exp]	15.39	0.9038	ATPC.1
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	19.49	0.8368
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	24.00	0.8724
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	26.22	0.8898

Compare expression of checked genes

Potri.018G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.