Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ARAC7.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28950 393 / 2e-141 ATRAC7, ARAC7, ATROP9, ROP9 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) AT3G48040 325 / 2e-114 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) AT5G62880 319 / 5e-112 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT4G35020 309 / 2e-108 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT3G51300 307 / 2e-107 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT5G45970 306 / 2e-107 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT1G75840 305 / 7e-107 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT1G20090 303 / 4e-106 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT2G17800 302 / 1e-105 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT4G35950 299 / 2e-104 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073000 [exp] 333 / 1e-117 AT5G62880 354 / 7e-126 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.012G077800 [exp] 321 / 9e-113 AT5G62880 359 / 6e-128 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) Potri.004G174900 [exp] 316 / 5e-111 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.009G134600 [exp] 314 / 2e-110 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 314 / 3e-110 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.013G123800 [exp] 310 / 6e-109 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G242000 [exp] 308 / 4e-108 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.002G019500 [exp] 308 / 6e-108 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.014G051800 [exp] 307 / 2e-107 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023660 [exp] 382 / 3e-137 AT4G28950 367 / 2e-131 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) Lus10034932 [exp] 377 / 3e-135 AT4G28950 362 / 1e-129 Arabidopsis RAC-like 7, RHO-related protein from plants 9 (.1) Lus10034538 [exp] 314 / 4e-110 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 313 / 4e-110 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10033131 [exp] 308 / 7e-108 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10034876 [exp] 308 / 1e-107 AT3G48040 356 / 2e-126 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1) Lus10039899 [exp] 306 / 5e-107 AT4G35020 324 / 1e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014123 [exp] 305 / 9e-107 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10002181 [exp] 303 / 9e-106 AT4G35020 320 / 8e-113 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10019786 [exp] 300 / 2e-104 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.018G083400.2 pacid=42800915 polypeptide=Potri.018G083400.2.p locus=Potri.018G083400 ID=Potri.018G083400.2.v4.1 annot-version=v4.1 ATGAGTGCTTCCAAGTTCATTAAATGTGTTACAGTTGGAGATGGAGCTGTTGGCAAAACCTGTATGCTCATTTGTTATACCAGCAACAAGTTCCCTACTG ATTATATACCCACAGTGTTTGATAATTTTAGTGCTAATGTGGCTGTGGATGGGAGCATTGTCAATTTGGGACTGTGGGATACTGCAGGTCAGGAGGATTA CAGCAGGCTGAGGCCCCTCAGTTACAGAGGTGCAGACATATTTGTGCTGGCTTTCTCATTAATTAGTAGGGCAAGTTACGAAAATGTTCTTAAGAAGTGG ATGCCTGAACTGCGTCGATTTGCACCAAATGTTCCGATTGTTCTTGTTGGAACGAAATTGGACCTTCGTGAAGACAGAGGATATCTGGTTGATCATATGA ACTCTAATGTCATAACATCTGCTCAGGGGGAGGAGCTCAGGAAACAGATTGGTGCAGCAGCATATATTGAGTGCAGCTCTAAGACTCAGCAGAATGTCAA AGCTGTTTTTGATACTGCAATCAAGGTTGTTATTCAACCTCCAAGGAGGAAGGAGATGGCAAGGAAGAAAAGGAGCCGAAGTGCTGGTTGCACTATTGCG AGCATCGTGTGTGGAGGTTGTGTCGCATAG
AA sequence Show only first row Show all	>Potri.018G083400.2 pacid=42800915 polypeptide=Potri.018G083400.2.p locus=Potri.018G083400 ID=Potri.018G083400.2.v4.1 annot-version=v4.1 MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKW MPELRRFAPNVPIVLVGTKLDLREDRGYLVDHMNSNVITSAQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVIQPPRRKEMARKKRSRSAGCTIA SIVCGGCVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28950		ATRAC7, ARAC7, ...	Arabidopsis RAC-like 7, RHO-re...		Potri.018G083400 [exp]	0	1	Pt-ARAC7.2
AT3G44610			Protein kinase superfamily pro...		Potri.004G186200 [exp]	2.00	0.8932
AT4G15140			unknown protein		Potri.006G008000 [exp]	2.23	0.9091
					Potri.016G136300 [exp]	5.91	0.8768
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	8.83	0.8415	PtrAUX7
AT2G05810			ARM repeat superfamily protein...		Potri.002G224400 [exp]	11.09	0.8285
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	16.70	0.8382
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	17.32	0.8895	Pt-SYP111.1
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	18.16	0.8774
AT4G28230			unknown protein		Potri.019G116200 [exp]	19.44	0.8566
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	20.78	0.8773

Compare expression of checked genes

Potri.018G083400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.