Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TPX1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65980 280 / 3e-98 TPX1 thioredoxin-dependent peroxidase 1 (.1.2) AT1G65970 271 / 9e-95 TPX2 thioredoxin-dependent peroxidase 2 (.1) AT1G60740 268 / 2e-93 Thioredoxin superfamily protein (.1) AT3G52960 191 / 3e-62 Thioredoxin superfamily protein (.1) AT1G65990 197 / 4e-61 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein (.1) AT3G06050 108 / 4e-30 PRXIIF, ATPRXIIF peroxiredoxin IIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423500 [exp] 320 / 6e-114 AT1G65980 285 / 5e-100 thioredoxin-dependent peroxidase 1 (.1.2) Potri.013G102100 [exp] 187 / 6e-61 AT3G52960 278 / 1e-95 Thioredoxin superfamily protein (.1) Potri.019G024000 [exp] 101 / 3e-27 AT3G06050 311 / 2e-109 peroxiredoxin IIF (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015077 [exp] 279 / 7e-98 AT1G65980 268 / 3e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023180 [exp] 279 / 9e-98 AT1G65980 268 / 2e-93 thioredoxin-dependent peroxidase 1 (.1.2) Lus10023662 [exp] 277 / 5e-97 AT1G65980 264 / 5e-92 thioredoxin-dependent peroxidase 1 (.1.2) Lus10003373 [exp] 188 / 5e-61 AT3G52960 291 / 3e-100 Thioredoxin superfamily protein (.1) Lus10002843 [exp] 187 / 1e-60 AT3G52960 290 / 3e-100 Thioredoxin superfamily protein (.1) Lus10021932 [exp] 107 / 5e-29 AT3G06050 317 / 6e-111 peroxiredoxin IIF (.1) Lus10041218 [exp] 95 / 2e-23 AT3G06050 243 / 3e-79 peroxiredoxin IIF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00578 [poplar] [flax] AhpC-TSA AhpC/TSA family
Representative CDS sequence Show only first row Show all	>Potri.018G083500.1 pacid=42800799 polypeptide=Potri.018G083500.1.p locus=Potri.018G083500 ID=Potri.018G083500.1.v4.1 annot-version=v4.1 ATGGCCCCGATCGCTGTTGGTGATGTCTTGCCTGATGGAAAGCTCGCTTATTTCGACGAGCAAGATCAGCTCCAGGAAGTGTCCGTACACTCTCTAGTTG CCGGTAAAAAGGTCATCCTCTTTGGTGTTCCCGGTGCCTTCACCCCCACCTGCAGCTTGAAGCATGTGCCGGGGTTTATCGAGAAAGCAGGGGAGTTAAA ATCAAAGGGCGTTACTGAAATTTTGTGCATCAGCGTCAACGACCCCTTTGTGATGAAGGCATGGGCCAAATCTTACCCTGAGAATAAGCATGTCAAATTC TTAGCTGATGGGTCTGCAACGTACACCCATGCTCTCGGCCTTGAGCTTGACCTGCAAGAGAAAGGGCTTGGCACACGTTCTAGGAGGTTTGCTCTCTTGG TTGATGACCTTAAGGTGAAAGCTGCAAATATTGAAGGGGGTGGAGAATTCACTGTGTCCAGTGCCGATGATATCCTCAAGGATCTTTGA
AA sequence Show only first row Show all	>Potri.018G083500.1 pacid=42800799 polypeptide=Potri.018G083500.1.p locus=Potri.018G083500 ID=Potri.018G083500.1.v4.1 annot-version=v4.1 MAPIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKF LADGSATYTHALGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSADDILKDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Potri.018G083500 [exp]	0	1	Pt-TPX1.1
AT5G20090			Uncharacterised protein family...		Potri.012G095133 [exp]	26.64	0.7446
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.006G014900 [exp]	33.00	0.7299
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.010G057400 [exp]	57.54	0.6799
AT1G67350			unknown protein		Potri.003G173000 [exp]	80.42	0.7157
AT1G51410			NAD(P)-binding Rossmann-fold s...		Potri.009G052000 [exp]	87.89	0.6640	CCRL4
AT2G44360			unknown protein		Potri.001G230100 [exp]	89.48	0.7075
AT5G10460			Haloacid dehalogenase-like hyd...		Potri.019G099100 [exp]	92.73	0.6905
AT3G22480		PDF2	prefoldin 2 (.1.2)		Potri.001G240200 [exp]	111.66	0.6950
AT2G26210			Ankyrin repeat family protein ...		Potri.006G217100 [exp]	141.91	0.6370
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.015G113000 [exp]	153.40	0.6721	ARA7.2

Compare expression of checked genes

Potri.018G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.