Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G23030 89 / 7e-18 PUB11 ARM repeat superfamily protein (.1) AT5G42340 86 / 1e-16 PUB15 Plant U-Box 15 (.1) AT3G46510 85 / 2e-16 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G67530 84 / 4e-16 ARM repeat superfamily protein (.1.2) AT1G71020 82 / 9e-16 ARM repeat superfamily protein (.1.2) AT1G24330 82 / 1e-15 ARM repeat superfamily protein (.1) AT1G27910 81 / 5e-15 ATPUB45 ARABIDOPSIS THALIANA PLANT U-BOX 45, plant U-box 45 (.1) AT2G28830 81 / 5e-15 AtPUB12 PLANT U-BOX 12 (.1) AT1G49780 77 / 3e-14 PUB26 plant U-box 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240100 [exp] 768 / 0 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 727 / 0 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 227 / 3e-60 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G117300 [exp] 139 / 4e-33 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 122 / 5e-28 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G214100 [exp] 107 / 3e-23 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 103 / 3e-22 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.010G113900 [exp] 92 / 1e-18 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 89 / 1e-17 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034937 [exp] 1394 / 0 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 1087 / 0 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 744 / 0 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 691 / 0 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 155 / 2e-39 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10036201 [exp] 115 / 1e-25 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013745 [exp] 104 / 3e-22 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10039197 [exp] 103 / 5e-22 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10038340 [exp] 98 / 3e-20 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10016565 [exp] 86 / 1e-16 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.018G083600.3 pacid=42800958 polypeptide=Potri.018G083600.3.p locus=Potri.018G083600 ID=Potri.018G083600.3.v4.1 annot-version=v4.1 ATGGCAACCACCACAGCGTCCCAAATCCTCCACCACACCACTGCCTTCCTCTCCGAAACCCTCTCCCAACCTCATGACCACCGCCACCATCTTCTCTCCA CTCTCCGCCGCGAAGCCCCATCATCCAACAAAACCACCACCATCAAACCTCTGAATTTAGCAGTTGAGAATCTCGAAAACGCCATCTCTACTACCAATCC TTCCATTCGATCATCTTCTCTACGCCTCGCCCAAAAGGTTCTCCTCTCGTATCCGGATTCCCTCCTTTCCTCCTTACTTCTCTCTCTCATCTACACCCTC AACAACCGGCCCACCAATGCCTCCATAAGTCTCCTTAACATCTTCCATCTAGACCCTTCATTGGCTCGATCACAGATTGCTCCTGTTCTCTTTGAGGAGC TGTTTTTAGTCCATCTTCTACCAGTTCTTCGATGGTTTAATGAGCAAAGATCAAGGATTTTGTCCTCTTTAACATTGGATTGGGGTTATGATAGTGATGA AAATTCAATAGGTGATGTTTCAATTGTTGTTCCTTGTACGAAGTTGCTGTCAAAGATGAGTGGTGATCAAGCATTGGAGTTGAAGGAGTTAGAAAGCATA TACGAGGAGGTTATTGATGAGAATTGCAAAGTTTTTGCCAAGTATTTTAAGGAGGTTGTAACCAACGGTGATGAAAATAGAATGATAACGCCACCATCGG TGATCTTGAAGGAGTTGAGGAAAGTTGATAAATCTGAAGTGAGTGATGAAATTAGCAAGATGGAGGAACTCGGCTTTATGAATGGACGGTACAATCCAAT GTGGACTGAAGGAGAAAGATCTGTTGATTTCCTTAGTTTTAGCGGGGCTAGCAAATCCAAGTATTCTTCACCATCCTATCCTCAAAGGGTCTCTCCAGAG ACCATAAAAAATATCAGCTGTAGAAGATCGACAGCATTTCCCACATCGTTAAATTCTGATTCTGAGCCTGAGTTGTCTTTAGAAGACAATATGGCCTCTT CTGGTGCATCTTCTTCTTGTTGTTCGGAATCCGAAGCTGAAATTGAGGAAAACAACAGAAAAATGGCATTGTTTGAGCCCACACAAAGCGAAACCCAAAA ACAAAAGCAGGCTACCGTTGCAGATTTCAGTAGTACTTCTTCAGAACATTCAATGGCCGATACAGATAGCTCACCTGGCGGAGGAAAACATACCCCTCCC AAGGACTTCGTCTGTCCGATAACAAGTCATATATTTGATGATCCAGTGACTCTTGAGACAGGACAGACTTATGAACGTAGGGCGATCCAAGAATGGCTTG AAAGAGGAAACTCAACATGCCCAATCACACGGCAGAAGTTGAATTGCACCCAGCTACCTAAAACAAACTATGTGCTCAAAAGGCTTATAGCAAGCTGGAA AGAACAGAATCCTGCAGGTATGGTCTCCATTCCACCAGAAACTCAACAGAAGAAGACAGAGCCAAGCTTCATGTCAAAAGAAATTCCTTCAAGTACTTCA CCAAATAGTGTCATTATCCAGACCACCATTGATGGCACAATCAGTGAGCTGAGACTTGCCATTACAAATCTTTGTATGTCAGAAATTTTGAATGAGTCCG AAATGGCTGTTCTTCAAATAGAGAGATTTTGGTTGGAGGCAGCCATGGAATTTGATATTCAAAGTATGCTTTCCAAACCTCCCGTTATCAATGGATTTGT GGAGGTCCTTCTCAATTCTGCTGATCCTCTTGTACTGAAAGCAACAATTTTTCTCTTGTCTGAGTTGGGTTCGAGAGACAAAGGTGTAATCCATACACTT ACAAGAGTTGATTCTGACGTGGACTGCATTGTGGCCCTCTTCAAGAAGGGTTTGCTGGAGGCTGTTGTTTTGATATATCTATTGAGGCCCCCTACCATGA GCCTACTTGAGATGGACATGGTCGAATCCCTCCTAACAGCCATTAAGAATAAAGAGGATGATATGCTTAAGATGTGTCTGAAACCAAAAACAGCATCAGT GCTTTTATTGGGACAGATCCTTGGTAGCAGTGAAGATAGTATTATTTCTTCAATTGCCAGTGCCATTATCTCAACAAAAGTGATCGAAAGTATTATTGAC AGCTTGCAAGCTGAGCAGACGGAGAGGATTGCAGCAGTTGGGATCTTATTGAAATGCATGCTGGAGGATGGGAAATGCAGAAACACCGTTGCGGATAAAG CTGAGTTAGCCCCTGTTTTGGACAGCTTCATGAGTGCAAGTGATGGCGAGAGATTTGAGATTGTTCAGTTCCTCTATGAATTAGTCAAATTAAACAGGAG GACATTCAATGAGCAAATTCTTCACATCATTAAGGATGAAGGGGAATTTTGTTCAATGCACATCTTCCTAAGTTATTTACAGGTTACTCTTCCAGATCAG TCTCCTGTAGTGGCTGGTCTCCTGCTCCAACTTGATCTTCTGGTTGAGCCGAGAAAGATGAGTATATATCGTGAAGAAGCAATAGAGAGCCTCATTTCAA GCCTCAGGAATTCTGAATTTCCTGCTGCTCAAATAGCAGCTGCGGAGACGATTGTGTCATTGCAAGGGAGGTTCACTGTCTCTGGAAAGTCCCTAACCCG AGCTTTTCTTCTGAAACAAGCTGGACATGGAAAAATTTACAAAAATCTTATGCGAATGGAGCAACTCGGAAAACTTTCTGGAGAAATTGAAGAAAACTTG GAAGAAGAGAAGGCAGCTGAAGAATGGGAAAGAAAAATGGCCTTTGCTCTAGTAAGCTATGAGTTTGGTCTCCTCTTTGAAGCTTTAGCAGAAGGCATGA GGAGTAGATGTGCAGAGTTACGTTCAGCATGCTTTGTGTCAGCAACTTGGCTTGTACATATGCTTGGCATTCTTCCAGACACAGGGATACGAGCAGCAGC TCGAGTTTGCTTTCTCAAGCTCCTCATTGAAATATTCACGTCTTCGAAGGACATTGAACACAAAGTCCTTTCATTGGTGGCTCTAAACAGCTTCATCAAG GACCCTGAGGGGCTGCATGACCTTACTTCATCCATGAAAGATATTAAGAAAGATCTGAGAGAGCTTAGAAAATCTTCATCCTTGGCAGTTGAAATTCTAA AAGTTCTCTCAGCTGGCCATGACTCTAGTATTGCTGAATTATGGACTCATAATGAATTAGTTCAAGTAGATTGCAGTGGGAATGGAGAAGTGCTTTCAAT TACTTTCTACAATGACAAGATATTTTCTGGACATTCAGATGGAACTATAAAGGTTTGGACTGGTAAAGGTAGCATTCTTCATCTCATCCAAGAAATTCGA GAACACACCAAGGCTGTCACTAGCTTGGCAGTATTACAGCCGGGAGAGAAATTATACAGTGGTTCACTGGATAGAACTGCAAGGGTATGGTCTATTGGCA ACGAATCTTTGACTTGTGTACAAGTACATGATATGAAGGACCAGGTTCATAATTTAGTGGTAGCCAATGGAATTTGTTGCTTCATTCCACAAGGAGCTGG TGTCAAGGTTCACTCATGGAATGGAGGATCCAAATTATTGAATCCAAATAAATATGTAAAGTGCTTGTCTCTAGTACATGGAAAACTATACTGTGGATGC CAAGACAGTAGTATTCAGGAAATTGATTTGACAACAGGAACACTTGCTACCATTCAACATGGATCTAGAAAACTGCTAGGAAAAACAAACCCAATCCATG CACTTCAAGTTCAAAATGGACTGATTTATTCAGCCAGCTCACCCTTTGATGGAGCAGCAGTGAAGATTTGGAATGCATCCAATTATGGTCTGGTTGGCTC ACTACCTTCTATACTCGAAGTGCGGTCTATGGCCATAAGCTCAGATCTCATTTACGTGGGCTGTAAGGCAGGAACTGTTGAGATTTGGGATAGAAAGAAA CAACAAAATAGAGTTGAAATACTACAGACAGGTACAAATGATAAGGTTCTTTGCATGGCTCTGAATGCCAACGAAGATGTGTTGGTGATTGGCACTTCAA CTGGCCAGATTCAGGCATGGGGTCTTAGCTAG
AA sequence Show only first row Show all	>Potri.018G083600.3 pacid=42800958 polypeptide=Potri.018G083600.3.p locus=Potri.018G083600 ID=Potri.018G083600.3.v4.1 annot-version=v4.1 MATTTASQILHHTTAFLSETLSQPHDHRHHLLSTLRREAPSSNKTTTIKPLNLAVENLENAISTTNPSIRSSSLRLAQKVLLSYPDSLLSSLLLSLIYTL NNRPTNASISLLNIFHLDPSLARSQIAPVLFEELFLVHLLPVLRWFNEQRSRILSSLTLDWGYDSDENSIGDVSIVVPCTKLLSKMSGDQALELKELESI YEEVIDENCKVFAKYFKEVVTNGDENRMITPPSVILKELRKVDKSEVSDEISKMEELGFMNGRYNPMWTEGERSVDFLSFSGASKSKYSSPSYPQRVSPE TIKNISCRRSTAFPTSLNSDSEPELSLEDNMASSGASSSCCSESEAEIEENNRKMALFEPTQSETQKQKQATVADFSSTSSEHSMADTDSSPGGGKHTPP KDFVCPITSHIFDDPVTLETGQTYERRAIQEWLERGNSTCPITRQKLNCTQLPKTNYVLKRLIASWKEQNPAGMVSIPPETQQKKTEPSFMSKEIPSSTS PNSVIIQTTIDGTISELRLAITNLCMSEILNESEMAVLQIERFWLEAAMEFDIQSMLSKPPVINGFVEVLLNSADPLVLKATIFLLSELGSRDKGVIHTL TRVDSDVDCIVALFKKGLLEAVVLIYLLRPPTMSLLEMDMVESLLTAIKNKEDDMLKMCLKPKTASVLLLGQILGSSEDSIISSIASAIISTKVIESIID SLQAEQTERIAAVGILLKCMLEDGKCRNTVADKAELAPVLDSFMSASDGERFEIVQFLYELVKLNRRTFNEQILHIIKDEGEFCSMHIFLSYLQVTLPDQ SPVVAGLLLQLDLLVEPRKMSIYREEAIESLISSLRNSEFPAAQIAAAETIVSLQGRFTVSGKSLTRAFLLKQAGHGKIYKNLMRMEQLGKLSGEIEENL EEEKAAEEWERKMAFALVSYEFGLLFEALAEGMRSRCAELRSACFVSATWLVHMLGILPDTGIRAAARVCFLKLLIEIFTSSKDIEHKVLSLVALNSFIK DPEGLHDLTSSMKDIKKDLRELRKSSSLAVEILKVLSAGHDSSIAELWTHNELVQVDCSGNGEVLSITFYNDKIFSGHSDGTIKVWTGKGSILHLIQEIR EHTKAVTSLAVLQPGEKLYSGSLDRTARVWSIGNESLTCVQVHDMKDQVHNLVVANGICCFIPQGAGVKVHSWNGGSKLLNPNKYVKCLSLVHGKLYCGC QDSSIQEIDLTTGTLATIQHGSRKLLGKTNPIHALQVQNGLIYSASSPFDGAAVKIWNASNYGLVGSLPSILEVRSMAISSDLIYVGCKAGTVEIWDRKK QQNRVEILQTGTNDKVLCMALNANEDVLVIGTSTGQIQAWGLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06880			Transducin/WD40 repeat-like su...		Potri.018G083600 [exp]	0	1
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	12.36	0.6540
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	21.67	0.6103
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136700 [exp]	23.49	0.6046
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G219300 [exp]	28.49	0.6061
AT4G19050			NB-ARC domain-containing disea...		Potri.004G170392 [exp]	53.00	0.5975
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117600 [exp]	53.83	0.5454	CYP72D1
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022700 [exp]	73.48	0.5461
					Potri.008G031000 [exp]	74.61	0.5815
					Potri.001G060300 [exp]	91.65	0.5284
					Potri.013G135900 [exp]	97.14	0.5311

Compare expression of checked genes

Potri.018G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.