Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29100 278 / 5e-91 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 224 / 1e-70 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G20640 136 / 4e-36 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 133 / 4e-35 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 131 / 8e-35 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G19500 120 / 9e-32 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 109 / 5e-28 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 108 / 3e-27 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 103 / 1e-26 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 99 / 8e-25 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185900 [exp] 333 / 5e-114 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 323 / 8e-110 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 147 / 3e-40 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029100 [exp] 147 / 5e-40 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 139 / 3e-37 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 137 / 2e-36 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 135 / 5e-36 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 134 / 2e-35 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 121 / 3e-32 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023669 [exp] 244 / 3e-78 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10034940 [exp] 206 / 5e-64 AT4G29100 171 / 4e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011105 [exp] 139 / 1e-40 AT4G29100 126 / 4e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018400 [exp] 144 / 3e-40 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007613 [exp] 142 / 2e-39 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 142 / 5e-38 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013874 [exp] 125 / 4e-33 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010638 [exp] 122 / 3e-31 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 96 / 5e-24 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 96 / 6e-24 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G083700.1 pacid=42800894 polypeptide=Potri.018G083700.1.p locus=Potri.018G083700 ID=Potri.018G083700.1.v4.1 annot-version=v4.1 ATGAATAGAGGGGTTTTGCAGAGTTCACCGGTGCAGCAAATGATGGCTGGCAACCCCAACTGGTGGAGCATCAACAATATGAGGCCACCAATAACTCATC ATCAACAACCCTCTCCTTTTCTGCCTCCTCCTAGTCTCTTCCCTCAATTCCTACCTTCCATTTCTTCTTCTTCATCATCTTCTCTTCCTCTTCCTTCTTG GAATTATGATAACCCAGATCAGCTTCCAGAGTCATGGAGCCAACTACTTCTGGGTGGATTGGTGTGTGATGAAGACAAGAGCAATATAAGCAATTTTCAA GCAAAGAAGATGGAGAATTGGGAGGAGCAAGTGTTACATCAAGCATCAAGTGCTTCGGTTATGGATGTCAAGCAAGAAAACTCTGCAAGCAACTACGTGT ACGGTGCAAATGAAGATTTCCAGGCAGCTGCAAAACCTACAGCTTGTTCTCAAGTGATACCTGCTTCATCCCCCAAGTCCTGTGTTACCAGTTTCAGCAG TAACATGTTGGATTTCTCTACCAGCAAAGGAGATGGAAGGCATCCACCACCAGATCGATCTTCTGATTGTAACAGCACCGCTAATGGTGGGGCAGTAAAG AAAGCTAGGGTTCAATCTTCTTCCGCCCAACCTACCTTTAAGGTGAGGAAGGAGAAATTAGGTGATAGGATTACCGCTCTTCACCAGCTTGTTTCTCCAT TTGGGAAGACTGACACGGCCTCTGTCTTGTTAGAAGCTATTGGGTACATCAGATTCCTTCAGAGCCAAATTGAGGCTCTCAGCTTACCGTACTTGGGCAG TGGATCCACAAATATGAGGCAGCAACAATCTGTTCAAGGAGAAAGCAACTGTATATTTCCCGAGGACCCCGGTCAGCTGTTGAATGATAGCTGCATAAAG AGGAAAGGAGCTTCTCAGCAGGACTCTCACGGGGAGCCAAAGGACCTGAGGAGTAGAGGATTGTGTCTTGTTCCAGTGTCATGCACACTGCAAGTTGGCA GCGATAATGGAGCAGACTACTGGGCTCCCGCTCTTGGAGGGGGGTTCCGATAG
AA sequence Show only first row Show all	>Potri.018G083700.1 pacid=42800894 polypeptide=Potri.018G083700.1.p locus=Potri.018G083700 ID=Potri.018G083700.1.v4.1 annot-version=v4.1 MNRGVLQSSPVQQMMAGNPNWWSINNMRPPITHHQQPSPFLPPPSLFPQFLPSISSSSSSSLPLPSWNYDNPDQLPESWSQLLLGGLVCDEDKSNISNFQ AKKMENWEEQVLHQASSASVMDVKQENSASNYVYGANEDFQAAAKPTACSQVIPASSPKSCVTSFSSNMLDFSTSKGDGRHPPPDRSSDCNSTANGGAVK KARVQSSSAQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSTNMRQQQSVQGESNCIFPEDPGQLLNDSCIK RKGASQQDSHGEPKDLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	2.64	0.7739
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	2.82	0.8427
AT5G43150			unknown protein		Potri.003G187500 [exp]	3.16	0.8067
AT4G38960	CO		B-box type zinc finger family ...		Potri.004G162600 [exp]	6.92	0.7710
AT2G38400		AGT3	alanine:glyoxylate aminotransf...		Potri.016G132200 [exp]	7.34	0.8045	AGT3.1
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.008G172400 [exp]	9.53	0.7584	IAA12.1
AT4G02630			Protein kinase superfamily pro...		Potri.014G026100 [exp]	10.19	0.7034
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.015G029200 [exp]	11.13	0.7905
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	11.61	0.7699
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.014G176600 [exp]	12.00	0.7089

Compare expression of checked genes

Potri.018G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.