Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29060 692 / 0 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT4G11120 90 / 1e-18 translation elongation factor Ts (EF-Ts), putative (.1) AT5G30510 60 / 6e-09 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 57 / 6e-08 Nucleic acid-binding proteins superfamily (.1) AT3G11964 53 / 1e-06 RNA binding;RNA binding (.1) AT3G03710 52 / 2e-06 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) AT5G14580 52 / 2e-06 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172300 [exp] 91 / 6e-19 AT4G11120 514 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Potri.008G101100 [exp] 64 / 3e-10 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 64 / 3e-10 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 54 / 4e-07 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.001G347900 [exp] 53 / 1e-06 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 47 / 7e-05 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 47 / 0.0001 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.016G062600 [exp] 44 / 0.001 AT3G11964 2209 / 0.0 RNA binding;RNA binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043229 [exp] 1115 / 0 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10011108 [exp] 1097 / 0 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10016073 [exp] 90 / 1e-18 AT4G11120 549 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Lus10012296 [exp] 88 / 6e-18 AT4G11120 531 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Lus10037822 [exp] 62 / 2e-09 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10017100 [exp] 61 / 3e-09 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10022250 [exp] 59 / 3e-08 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 59 / 3e-08 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 50 / 9e-06 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10013636 [exp] 50 / 1e-05 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0021 [poplar] [flax] PF00889 [poplar] [flax] EF_TS Elongation factor TS
Representative CDS sequence Show only first row Show all	>Potri.018G083900.1 pacid=42801078 polypeptide=Potri.018G083950.1.p locus=Potri.018G083900 ID=Potri.018G083900.1.v4.1 annot-version=v4.1 ATGACACCTGTGCTCCCGTGTTCTACAAGTAATATTTGTCTCATTCCTGGAACTGCTTTTTCAATAAATAAGAATAATAGTCTCAAAAATGGAAGTTTGT CAAGGAAATCTACAAAATATGCATCATCCTCACAAAGACTTGTGTTGCCTCTTCCTGGTTTTGTTAAGTTGTTCCCACAATACCACAGGGATTGTGCTAT GGTCCATAGATCTGTAGCGCATACCGTATCAGCCACAGGGACTGATGTAGCAGTAGAGGAGCCAGATTCACCTGTTGTTGATAAAGATTCTGATGGGGTT TCAGAGATTCCAGCAGATGCAGTTGAAACAATTGATTCCTCCACCAAAGCAGGTTCAAGTCCTGCTCCAGCTCAATCTAGTCGTTCAAAGGGCAGTAGGA AAAGTGAGATGCCACCTGTAAAGAATGAGGACCTGGTTCCTGGTGCAACATTTACTGGCAAAGTAAGGTCAATCCAGCCATTTGGTGCTTTTGTTGATTT TGGAGCTTTCACAGATGGACTTGTACATGTTTCAAAGTTGAGTGACAGCTTTGTTAAGGATGTTGGAAGTGTTGTATCTGTTGGTCAAGAAGTAAAGGTG AGGTTAGTTGAGGCAAACACCGAGACAGGGCGGATTTCTCTTACTATGCGTGAAAATGATGATACGAGTAAGTTTCAGCAACGGAATGATTCTCCTGCCA CTGGGAGCAGCAATAGGCAGGCTGCCCGAAGGAACACTTCAAAGCCCAACCAAAGAAAAGATGAGGTAAAAAGCTCAAAGTTTGTTAAAGGGCAGAATCT AGAGGGCACAGTAAAAAATCTGACCAGGTCTGGTGCTTTTATATCCCTTCCTGAGGGTGAGGAAGGATTCCTACCCAGATCAGAAGAATCTGATGATGTA TTTGCAGGCATGATGGGGGACTCATCACTGCAGATCGGCCAGGAAGTCAGTGTCAGGGTGTTGCGTATCACAAGGGGACAAGTTACCTTGACAATGAAAA AAGAAGACGCTGATAAACGGGACACAGAGCTTATCCAAGGGATTGTCCATACTGCGACGAACCCATTTATGCTGGCTTTCCGTAAGAACAAGGATATTGC TGCATTTTTGGATGAAAGGGAGATAGCAACAGAACAGCCTGAAAAACCAATACCTTCAGTGCAAATAGGAGAGAAAAACCAAACTGAACCTTTACCTAAT ATTGCTGAAGTGCAGGACCAACCAGTAAGCAATGATGAGGTATCGAGCGGTATCCCTTCAATGGTGGATGAATCAGTAGAGGGTGATGAGACTTCTTTAA AGGAGGTGGTTGTGGGTGCCAATGTTGCCTCTGATGAGAAGCAGCCAGAAACTGTTGAATCTAGTGTTGATAGTACATTACAGACTGTAGAGAAAGAAGC AGAGGTCACTGGCTATAAGGAGCCAGAAAGCATAGAGTCTAGCACACCACAAAATGTGGACGATACAGTTCAGACATTAGAGAAGAAAGCAGTGGCTGAT GATGATAAGGAGCCAGAAAGCATGGAATCTAGCACATCACAAAATGCGGATGATACAGTTCAGGCCTTAGAGAAAGAAGCAGAGGCCAACGATAAGGAGC CAGAAAGCATAGAGTCTAGTTTATCACAAAGTGTTGATGATAGTGTTACAGGATCAGATAAGGTAGAAAGCATAGAAAATTCTGATGCATCTGGAGATAC ATCCGAGGCTCAAATTATATCTTCAGAAAGTCGAACCAGTGAAGAAGTTGTTGAGAGCCAAGTTAAAAGTATTGAGGATGAAATGCAGATTCAAACTCCT GCTGCTGAGACTGAAATTACTTCTGCCTCACAACTTGAAGATAAAAAGGTGGAACCTGCGCCCGAGATAAATGGCACTGTGGGTGCTTCAAACGGACAAA GTGGCAGTCTTTCTCCCAAGGAGAGTGTGACTACAGGGTATGACAAGAGTATCAGGGCCACATTTGACCAATTACAGGCAACTATATCTCCAGTTCTAGT GAAGCAACTTCGTGAAGACACAGGAGCAGGAATGATGGATTGCAAGAAAGCCCTTTCAGAAACTGGAGGGGACATTGTTAAAGCTCAGGAGTTCCTTAGA AAGAAAGGTTTAGCAAGTGCAGAAAAGAAGGCTAGTAGAGCCACAGCTGAAGGAAGAATTGGTTCGTACATTCATGATAGCAGGATTGGGGTCCTAGTAG AAGCGAACTGTGAAACAGATTTTGTCTCCCGTGGTGACATTTTCAAGGAGCTGGTGGATGATCTAGCCATGCAGGTGGCTGCATGCCCTCAGGTTCAGTA CCTTGTTACAGAAGATGTGCCTGAAGATATTTTAAACAAGGAAAAAGAGATTGAAATGCAGAAGGAAGATCTCTTGTCAAAACCGGAGCAAATAAGATCA AAGATTGTAGAAGGGCGTATAAGGAAGACGCTTGAGGAGCTGGCATTGCTGGAGCAGCCCTACATTAAGAATGACAAGGTAGTAGTGAAGGACTGGGTGA AGCAGACAATTGCAACAATTGGTGAAAATATTAAAGTGAAGAGGTTTGTTCGCTACAATCTTGGTGAAGGCTTGGAGAAGAAGAGCCAGGATTTTGCTGC TGAGGTGGCTGCTCAAACTGCAGCAAAACCAGCAGAACCAGCAAAAGAGCTGCCTGCAGAAGCAGAAGCCAAGGAAACTGCTCAAAAGCCACCAGCAGTA GTAGTTTCTGCTGCTCTTGTTAAACAACTGCGGGAAGAAACTGGAGCTGGAATGATGGACTGCAAGAAGGCTCTCTCTGAAACTGGAGGGGATCTTGAGA AGGCACAAGAGTATCTCAGAAAGAAGGGTCTTTCAGCTGCTGATAAAAAATCCAGCCGTCTTGCAGCTGAAGGCAGAATTGGTTCGTATATCCATGACTC CCGTATTGGAGTGCTGATAGAAGTAAACTGTGAAACTGACTTTGTGGGAAGAAGTGAAAAATTCAAGGAATTGGTTGATGATCTAGCAATGCAAGTTGTG GCATGCCCACAAGTGCAGTTTGTATCAGTTGAAGATATTCCTGAGAACATTCGGAACAAAGAAAAGGAGCTTGAAATGCAGAGAGATGATCTTATGTCGA AACCAGAGAACATAAGAGAGAAGATTGTTGAGGGCAGGATCTCAAAGAGGTTCGGAGAGCTTGCTCTTCTAGAGCAGCCATTCATCAAGAATGATAGTGT TTTGGTGAAGGATTTGGTGAAACAGACTGTTGCTGCTCTTGGGGAGAACATAAAAGTCCGCAGGTTTGTTCGGTTGACTCTTGGAGAATCAACTGAAGAT ACAGAAACAGGAGCCCAAGCATAA
AA sequence Show only first row Show all	>Potri.018G083900.1 pacid=42801078 polypeptide=Potri.018G083950.1.p locus=Potri.018G083900 ID=Potri.018G083900.1.v4.1 annot-version=v4.1 MTPVLPCSTSNICLIPGTAFSINKNNSLKNGSLSRKSTKYASSSQRLVLPLPGFVKLFPQYHRDCAMVHRSVAHTVSATGTDVAVEEPDSPVVDKDSDGV SEIPADAVETIDSSTKAGSSPAPAQSSRSKGSRKSEMPPVKNEDLVPGATFTGKVRSIQPFGAFVDFGAFTDGLVHVSKLSDSFVKDVGSVVSVGQEVKV RLVEANTETGRISLTMRENDDTSKFQQRNDSPATGSSNRQAARRNTSKPNQRKDEVKSSKFVKGQNLEGTVKNLTRSGAFISLPEGEEGFLPRSEESDDV FAGMMGDSSLQIGQEVSVRVLRITRGQVTLTMKKEDADKRDTELIQGIVHTATNPFMLAFRKNKDIAAFLDEREIATEQPEKPIPSVQIGEKNQTEPLPN IAEVQDQPVSNDEVSSGIPSMVDESVEGDETSLKEVVVGANVASDEKQPETVESSVDSTLQTVEKEAEVTGYKEPESIESSTPQNVDDTVQTLEKKAVAD DDKEPESMESSTSQNADDTVQALEKEAEANDKEPESIESSLSQSVDDSVTGSDKVESIENSDASGDTSEAQIISSESRTSEEVVESQVKSIEDEMQIQTP AAETEITSASQLEDKKVEPAPEINGTVGASNGQSGSLSPKESVTTGYDKSIRATFDQLQATISPVLVKQLREDTGAGMMDCKKALSETGGDIVKAQEFLR KKGLASAEKKASRATAEGRIGSYIHDSRIGVLVEANCETDFVSRGDIFKELVDDLAMQVAACPQVQYLVTEDVPEDILNKEKEIEMQKEDLLSKPEQIRS KIVEGRIRKTLEELALLEQPYIKNDKVVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTAAKPAEPAKELPAEAEAKETAQKPPAV VVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSAADKKSSRLAAEGRIGSYIHDSRIGVLIEVNCETDFVGRSEKFKELVDDLAMQVV ACPQVQFVSVEDIPENIRNKEKELEMQRDDLMSKPENIREKIVEGRISKRFGELALLEQPFIKNDSVLVKDLVKQTVAALGENIKVRRFVRLTLGESTED TETGAQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	0	1
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	2.82	0.9863
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.006G005500 [exp]	4.24	0.9815
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.005G058400 [exp]	5.00	0.9821	PtrTrxm3
AT3G09210		PTAC13	plastid transcriptionally acti...		Potri.006G094800 [exp]	5.19	0.9844
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	6.32	0.9828
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G224900 [exp]	6.63	0.9768
AT1G32220			NAD(P)-binding Rossmann-fold s...		Potri.001G136900 [exp]	7.74	0.9781
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	8.36	0.9758
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	8.36	0.9802
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	9.16	0.9726

Compare expression of checked genes

Potri.018G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.