Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20050 1461 / 0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT3G06270 381 / 3e-123 Protein phosphatase 2C family protein (.1) AT3G08720 138 / 3e-34 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 137 / 6e-34 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G58140 137 / 1e-32 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G23310 131 / 1e-31 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G01700 125 / 7e-31 Protein phosphatase 2C family protein (.1.2) AT5G27930 125 / 1e-30 Protein phosphatase 2C family protein (.1.2) AT2G20470 125 / 9e-30 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G14350 125 / 1e-29 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028300 [exp] 413 / 2e-134 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.008G198700 [exp] 410 / 3e-133 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.006G109600 [exp] 146 / 5e-37 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 138 / 2e-34 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.008G167800 [exp] 131 / 1e-31 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.012G073700 [exp] 129 / 2e-31 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.005G226700 [exp] 130 / 4e-31 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.018G059800 [exp] 125 / 6e-31 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.001G342000 [exp] 131 / 7e-31 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034955 [exp] 1558 / 0 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 1319 / 0 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10041242 [exp] 396 / 2e-127 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10034009 [exp] 377 / 2e-120 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 372 / 2e-118 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 340 / 7e-107 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10025213 [exp] 141 / 4e-34 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10026572 [exp] 139 / 3e-33 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 134 / 1e-31 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10033125 [exp] 129 / 7e-31 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G084900.1 pacid=42801415 polypeptide=Potri.018G084900.1.p locus=Potri.018G084900 ID=Potri.018G084900.1.v4.1 annot-version=v4.1 ATGGGCTGCGTCTACTCGCGATCCTGTATCGGCGAGGTCTGCATACCGAAAGACCTAAAAGCAAAAAACCAAAACCACCAAGAAACCACTCAGAAAGCTG GAGAGATTCCAGTCTTCTCTCCTGCTGCATCATCTTCATCACACGAATCCGAAACTCGTGACCACATCAACCAACCAAGCAACCATGAGTTAGGAATTAC CAGACTTTCACGTGTCTCCTCGCAGTTCCTCCCTCCTGACGGATCTAGAACCATCAAAATCCCATCAGCAAACTACGAATTAAAATGCTCCTACCTCTCG CAGCGAGGGTATTATCCTGACGCCTTAGATAAAGCGAATCAGGATAGTTTCTGTATCCACACCCCGTTTGGTGCAAGTCTGGACGATCATTTCTTCGGCG TTTTTGATGGGCACGGGGAGTTCGGTGCTCAATGTTCGCAGTTTGTTAAGCGGAAATTGTGCGAAAATCTGTTACGTAACGGGAAGTTCCGGGTGGATGC TGTAGAAGCATGTCACTCTGCGTTTTTGAGCACGAATTCGCAGTTACACGCGGATAGTTTAGATGATACTATGAGTGGGACCACTGCTATAACTGTTTTA GTTAGAGGGAGGACGATTTATGTGGCGAATTCGGGTGATTCGCGTGCTGTTATAGCCGAGAAAAGAGGGAATGAGATAGTTGCAGTTGATTTGTCGATTG ATCAGACTCCATTTCGTGTTGATGAGCTTGAGAGAGTTAAGCTTTGTGGTGCCAGAGTGCTTACATTGGATCAGATTGAAGGGTTGAAAAATCCTCATGT TCAGTGTTGGGGAAATGAAGAGGGTGATGATGATGGGGATCCGCCCAGATTGTGGGTCTCGAATGGGATGTATCCAGGGACTGCATTCACTAGGAGTATT GGGGATTCGATCGCCGAGAGTATTGGTGTTGTGCCTAATCCTGAGATTGTTGTTCTGGAACTTGGACCTCAGCATCCCTTCTTCGTGCTTGCTAGTGATG GAGTTTTTGAGTTTTTGTCTAGTCAAACTGTGGTTGACATGGTTGCAAAATATAAAGATCCGCGCGATGCCTGTGCTGCAATTGTGGCTGAATCATATCG ACTTTGGCTACAGTATGAAACTCGTACAGATGATATCACAGTGATAGTTGTGCATGTTAATGGTTTAACTGAAAGTTCTGTTAGTCAATCTACAATAAGT CCAGGGGCTTTACGACCACCTGTTCCTCAAATTGTTGAGGTAACAGGATCAGAATCTCCTGCAAACTTTGGGTGGAATGCAAGGAACCCTCGCGTGAGGC ATGATTTGTCACGGGCACGCCTCCGTGCCATTGAGAGTTCACTTGAGAATGGGCAGCTCTGGGTTCCTCCATCTCCAGCCCATAGGAAAACTTGGGAAGA AGAAGCACACATTGAGAGAGCATTGCATGGTCATTTCCTCTTCCGAAAGCTTACTGATACTCAGTGTCATGTTCTATTGGATTGCATGCAAAGAGTTGAA GTTCTGCAGGGAGAAGAAGTTGTTAGACAGGGTGGTGAAGGTGATTGCTTTTATGTTGTTGGCAGTGGAGAATTTGAGGTGTTCGCAACTCAGGAAGAGA AAGATGGAGCATTGCCTAGGGTTTTGCAGTCCTATACAGCAGAGAAGTTATCGTCTTTCGGAGAGCTGGCGTTGATGTACAATAAGCCTCTTCAGGCCTC TGTTCGTGCTGTGACGAGTGGAACGCTGTGGGCTCTAAAAAGAGAGGATTTTCGAGGAATACTGACATCGGAATTTTCTAATCTGTCATCCCTGAAGTTG CTTCGTTCTGTTGATTTGCTTTCTCAATTGACAATCTTGCAGCTTAGTCATATTGCAGATACTCTTTCTGAAGTTTCCTTCTCAGATGGCCAAACCATAG TCGATATGGATGAGGGTCTCTCTGGATTACACATCATCCAAAAAGGACAAGTGAGAATTACTTTTGATGCGGACTTATTAAGTTGTCCAAATGTTGGAAG TCTGAAGTCTGAAAATCAAAAAGAGGATGATTATCTGCACTGTGGTAGCAAGCTATCCTTAGAGAAGAAAGAGGGAAGCTATTTCGGTGAATGGGAACTT CTTGGTGAACATTTTGATTCTGTAAGTGCAGTTGCTATTGGTGCATGTGTATGCTCTGTCTTGACAACGGAGAAATTTGATTCAGTTGTTGGTCCTTTGG CAAGGCTTTCCAAGGGAGAGGAAAAGTCAAGGAGCTCTTCTTCGAATTTTTTCAAGGAATCTGCTGAAATTACCAATGTGGCAGCTCCTCTTGAAGTTCG GCTATCTGATCTGGAGTGGAGCCATTCTTTATATTCCACTGATTACAGTGAGGTTGGGCTTGTAAATTTGAGGGACTCAGAAAATTTGCTTAGTTTGAAA AGGTTTTCAAAGCAGAAGATCAAGACTCTGGGAAAGGAGGAACAAGTTTTGAAGGAGAAGAATCTTATGAAAAGTTTGGGTGCTTCAGCTTTTGTGCCTG AGGTTCTATGTACCTGTGCAGATAGAAGACATGCTGCCATATTGCTAAATACATGCCTTGCTTGCCCATTGGCATCAATACTTCACACAGCACTTGACGA ACCATCTGCACGGTTTTGTGCTGCCACTGTTGTTATTGCCTTGGAAGATTTGCATAAGAATGGTGTTCTCTACAGAGGGGTGTCTCCTGAGGTCTTAATG TTGGACCGAACAGGATATATACAGCTAGTAGATTTCAGGTTTGGAAAGAAGTTGTCTGGTGAAAGAACATTTACAATTTGTGGAATGGCAGACTCTTTAG CTCCTGAGATAGTTCAGGGAAAGGGGCATGGTCTTCCTGCTGACTGGTGGGCAGTGGGAGTCTTGATCTATTTCATGCTGCAAGGTGAAATGCCATTTGG GTCGTGGAGAGACAGTGAACTTGATACATTTGCAAAGATTGCGAAAGGACAGCTAAATCTTCCTTCTAATTTCAGCCATGAAGCTGTTGAGCTCATCACC CAGTTGCTTGAAGTTGATGAAAGTTCAAGACTTGGAAGCCTAGGTCCCAATTCTATAAAAAATCATCCATGGTTTGATGGTATTGACTGGAAAGGGATTA GAGATAGAAGCCTTCCTGTTCCTCGTGAAATAACCTCTCGGGTTGCCCAACATTTGGAAAGTCACTCTGTGGAATGCACTGCTCCTCTAACTTCTCAATC ACAAGATTTAGACGATCTCAATGCTCTTGAATGGCTTGATGATTGGTAG
AA sequence Show only first row Show all	>Potri.018G084900.1 pacid=42801415 polypeptide=Potri.018G084900.1.p locus=Potri.018G084900 ID=Potri.018G084900.1.v4.1 annot-version=v4.1 MGCVYSRSCIGEVCIPKDLKAKNQNHQETTQKAGEIPVFSPAASSSSHESETRDHINQPSNHELGITRLSRVSSQFLPPDGSRTIKIPSANYELKCSYLS QRGYYPDALDKANQDSFCIHTPFGASLDDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNGKFRVDAVEACHSAFLSTNSQLHADSLDDTMSGTTAITVL VRGRTIYVANSGDSRAVIAEKRGNEIVAVDLSIDQTPFRVDELERVKLCGARVLTLDQIEGLKNPHVQCWGNEEGDDDGDPPRLWVSNGMYPGTAFTRSI GDSIAESIGVVPNPEIVVLELGPQHPFFVLASDGVFEFLSSQTVVDMVAKYKDPRDACAAIVAESYRLWLQYETRTDDITVIVVHVNGLTESSVSQSTIS PGALRPPVPQIVEVTGSESPANFGWNARNPRVRHDLSRARLRAIESSLENGQLWVPPSPAHRKTWEEEAHIERALHGHFLFRKLTDTQCHVLLDCMQRVE VLQGEEVVRQGGEGDCFYVVGSGEFEVFATQEEKDGALPRVLQSYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILTSEFSNLSSLKL LRSVDLLSQLTILQLSHIADTLSEVSFSDGQTIVDMDEGLSGLHIIQKGQVRITFDADLLSCPNVGSLKSENQKEDDYLHCGSKLSLEKKEGSYFGEWEL LGEHFDSVSAVAIGACVCSVLTTEKFDSVVGPLARLSKGEEKSRSSSSNFFKESAEITNVAAPLEVRLSDLEWSHSLYSTDYSEVGLVNLRDSENLLSLK RFSKQKIKTLGKEEQVLKEKNLMKSLGASAFVPEVLCTCADRRHAAILLNTCLACPLASILHTALDEPSARFCAATVVIALEDLHKNGVLYRGVSPEVLM LDRTGYIQLVDFRFGKKLSGERTFTICGMADSLAPEIVQGKGHGLPADWWAVGVLIYFMLQGEMPFGSWRDSELDTFAKIAKGQLNLPSNFSHEAVELIT QLLEVDESSRLGSLGPNSIKNHPWFDGIDWKGIRDRSLPVPREITSRVAQHLESHSVECTAPLTSQSQDLDDLNALEWLDDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	0	1
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Potri.019G080300 [exp]	5.09	0.6594
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.019G130900 [exp]	6.48	0.6540	Pt-P68.1
AT5G15380		DRM1	domains rearranged methylase 1...		Potri.001G347000 [exp]	7.74	0.6558
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.005G169100 [exp]	8.66	0.6060
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	8.94	0.6254
AT5G06560			Protein of unknown function, D...		Potri.006G199000 [exp]	10.39	0.6566
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	14.28	0.6148
AT3G42170			BED zinc finger ;hAT family di...		Potri.001G383800 [exp]	18.22	0.6562
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	21.54	0.5982
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.003G220900 [exp]	38.23	0.5627

Compare expression of checked genes

Potri.018G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.