Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28910 322 / 1e-105 NINJA novel interactor of JAZ (.1.2.3) AT3G29575 69 / 4e-13 AFP3 ABI five binding protein 3 (.1.3.4) AT3G07250 65 / 1e-10 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13740 62 / 3e-10 AFP2 ABI five binding protein 2 (.1) AT1G69260 61 / 8e-10 AFP1 ABI five binding protein (.1) AT3G02140 60 / 1e-09 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G162900 [exp] 853 / 0 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.008G096500 [exp] 66 / 2e-11 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.010G157900 [exp] 64 / 1e-10 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 62 / 3e-10 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 60 / 1e-09 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011116 [exp] 450 / 8e-155 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3) Lus10043236 [exp] 429 / 2e-146 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10036898 [exp] 67 / 3e-12 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10004645 [exp] 68 / 4e-12 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 66 / 1e-11 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10022764 [exp] 66 / 3e-11 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10037084 [exp] 62 / 2e-10 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10003145 [exp] 62 / 5e-10 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G085100.4 pacid=42800543 polypeptide=Potri.018G085100.4.p locus=Potri.018G085100 ID=Potri.018G085100.4.v4.1 annot-version=v4.1 ATGGAGGATGAGAATGGGCTTGAGCTTAGTTTGGGTCTAGGTTGTGGTGGATCATCTGCCAAATCCAAAGGTAAAAGTGGCAGCTCCTCAGATACTAGGA CAGAAGAAGGTGATAGAGGCAACAAATTGGTAGATGATTTTAAAAATTTTCTTCATGGTAATACCCAGAAGCAGGATTCAAGTACAGGGTCTCAAAGAAG TGATTCAGTGAAACCTCAAGAGAAGTTCTTTAATGACCTTTCCAAGAACAATGCAGATGCAGATGCGCCTATTAATTTGAACAATAGGGGGCTGTGGGTT TCAAGCGCTAATAGATCTGCTGAAACTGATGAAGAAAAAAGATCAGACCTGGGTAACAAGCGTAAACTGTTATTTGATGATTTAAATAATCAGAAGAAGC ATGAGAGAGATGCGCATCATTCTGATTTACATGACAAGAAATCACATATCTCCATAACTACAGAAGATGGCTCAACTGCTGAAAACGAAGATGTGGCAGA GTCTGAAGTTGAGGGTTCCACCTCAAGGTTGGCTTCTCACCATGATGATGGCTCCAAACAGTTTGTTGGAGTTGGTGGTCCTCCTGAGGCTACAAATGAA ATTCGTGGATTTTCTGATTCAAGTGTTGTGGAGTTACAAGGACAAAGGAGGCTCAGTAGTTCTTCAGAAAATGAATTTAAGCAGGGAAACTTGAATTATG GAGTTCCATTCTCAGTCCAACCAGTAAGCATCATGAATGTTCACTCATTTCCTATAAAGGAGTCTAACTCTGTTGGTGCACCCAGCACTTCAGGACATCC AATAACAGGCATGGTTCAGGTGCTGCCTACTTCAAATGGCGAGCAGCGACCTGGGAACCAATCTGTGAATCCTGGAAATTTGCCAGTAATGTTTGGCTAT TCCCCAGTCCAGCTTCCGACATTGGACAAGGATAATTCCTGGGGCTTGGTCTCTCATCTTCAACAGTTCCACCCTTCCTATCCTGGCAGAGCTCCATCAA ATGCAGAGAAGCAGAATGATGGGCTGAAGATTTCTCAAGCCATGCAAGCTATTGCACGAAATTCTACTGAGGTTGCACAATTTGATGGGAGGACATTGGG ACGGGCCAAAGGCGATCGCAAACAACTAATCACAGAGGAAGGCTCCTCTTCTCATACTGAAGATGATGCGAAAGGAAGCACCATGAACTTTAGGGCAAAG GATGCACCACCTGAGCGTTCGACAGCTGAAACCATCTGTTTTGATTTTTCAGCCATAAAGCCAGGTATTGGTCCAGCTGTAAAATTTGGGGGATGTGGTT CGTATCCAAATTTGCCATGGGTTTCTACCACGGCGCCTGGTCCGAATGGCAGAACAATTTCTGGTGTTACTTACAAATACAGTGCAAACCAAATCAGGAT TGTTTGTGCTTGCCATGGTTACCACATGTCCCCTGAGGAGTTTGTTCGACATGCAAGTGAAGAAAATGCTAATCCAGATGCTGGCAATGGGTTAGCTACA TTCCCAAACGCCAATCCCGCCGCCTCTACTCAGAGCTGA
AA sequence Show only first row Show all	>Potri.018G085100.4 pacid=42800543 polypeptide=Potri.018G085100.4.p locus=Potri.018G085100 ID=Potri.018G085100.4.v4.1 annot-version=v4.1 MEDENGLELSLGLGCGGSSAKSKGKSGSSSDTRTEEGDRGNKLVDDFKNFLHGNTQKQDSSTGSQRSDSVKPQEKFFNDLSKNNADADAPINLNNRGLWV SSANRSAETDEEKRSDLGNKRKLLFDDLNNQKKHERDAHHSDLHDKKSHISITTEDGSTAENEDVAESEVEGSTSRLASHHDDGSKQFVGVGGPPEATNE IRGFSDSSVVELQGQRRLSSSSENEFKQGNLNYGVPFSVQPVSIMNVHSFPIKESNSVGAPSTSGHPITGMVQVLPTSNGEQRPGNQSVNPGNLPVMFGY SPVQLPTLDKDNSWGLVSHLQQFHPSYPGRAPSNAEKQNDGLKISQAMQAIARNSTEVAQFDGRTLGRAKGDRKQLITEEGSSSHTEDDAKGSTMNFRAK DAPPERSTAETICFDFSAIKPGIGPAVKFGGCGSYPNLPWVSTTAPGPNGRTISGVTYKYSANQIRIVCACHGYHMSPEEFVRHASEENANPDAGNGLAT FPNANPAASTQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	0	1
AT5G40510			Sucrase/ferredoxin-like family...		Potri.001G344400 [exp]	1.00	0.9051
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.014G157200 [exp]	5.47	0.8171
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	6.70	0.8180
AT1G36310			S-adenosyl-L-methionine-depend...		Potri.002G091300 [exp]	12.00	0.8491
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.013G083300 [exp]	12.40	0.8160
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.014G194700 [exp]	12.64	0.8227
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.003G045200 [exp]	13.26	0.8315	IAR3.1
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.007G100600 [exp]	13.41	0.8442
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.016G004900 [exp]	14.42	0.7534
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Potri.006G135300 [exp]	17.49	0.8065

Compare expression of checked genes

Potri.018G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.