Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RCSTG.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77210 771 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT4G02050 580 / 0 STP7 sugar transporter protein 7 (.1) AT5G26340 545 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G11260 528 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT1G50310 528 / 0 ATSTP9 sugar transporter 9 (.1) AT3G19940 525 / 0 Major facilitator superfamily protein (.1) AT4G21480 509 / 8e-178 STP12 sugar transporter protein 12 (.1) AT5G23270 509 / 2e-177 ATSTP11, STP11 sugar transporter 11 (.1) AT3G19930 503 / 2e-175 ATSTP4, STP4 sugar transporter 4 (.1) AT3G05960 451 / 1e-154 ATSTP6 sugar transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253800 [exp] 808 / 0 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G113300 [exp] 589 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 583 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.009G048500 [exp] 546 / 0 AT1G77210 516 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.007G072800 [exp] 528 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 526 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 523 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 521 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 521 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022421 [exp] 762 / 0 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10036325 [exp] 551 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10010534 [exp] 545 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 543 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 524 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10018422 [exp] 522 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 519 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 511 / 1e-178 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10002452 [exp] 471 / 4e-163 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10009656 [exp] 471 / 2e-162 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.018G085200.1 pacid=42800987 polypeptide=Potri.018G085200.1.p locus=Potri.018G085200 ID=Potri.018G085200.1.v4.1 annot-version=v4.1 ATGGCAGGAGGTTTCGTCGATGCAGGAAATCTTAAGAGAGCTCATCTTTATGAGTACAAGATAACTGGTTATTTCATTTTTGCTTGCATCGTTGCAGCAT TAGGAGGATCACTTTTTGGATATGATCTTGGTGTTTCAGGTGGAGTCACTTCCATGGATGATTTCTTGGTAGAATTCTTCCCAGATGTTTACAGAAGGAA GCACGCACATCTCCGCGAGACAGATTACTGCAAATATGATGACCAAGTTTTGACTCTCTTTACATCCTCGTTGTACTTTGCGGCCCTCGTTAGCACATTC GGGGCCTCCTATGTAACAAGAAGCCGAGGTAGGAGGGCTAGCATCCTTGTTGGAGCTGTCAGCTTCTTTACAGGAGCACTTGTCAACGCTTTTGCAAAGA ACATTACAATGCTGATCATAGGACGATGCTTTCTTGGTGCGGGCATTGGATTCAGCAACCAAGCTGTTCCCTTGTACCTATCAGAAATGGCTCCGGCAAA AGTCCGAGGTGCAGTTAATCAACTTTTTCAACTGACAACCTGCTTAGGAATCCTAGTAGCAAACTTCATTAATTATGGAACCGAAAAGATTCATCCATGG GGATGGAGGCTATCTCTTGGCTTAGCTACAGTTCCTGCAACTATAATGTTTGTTGGTGGTATTTTCCTACCTGAGACCCCTAACAGTCTTGTAGAACAAG GAAAACTAGAGGAAGCCAGAAGAGTATTGGAGAAAGTTAGAGGCACAACGCGGGTTGATGCTGAGTTTGCTGATCTTGTTGATGCAAGTAATGAAGCAAG AGCCATAAAGCATCCTTTCAGGAATCTTCTTGCGAGGAAGAACCGACCCCAGTTCATAATTGGGGCCTTGGCGATCCCTGCATTTCAACAACTCACTGGC ATGAACTCCATACTCTTCTACGCTCCCGTCTTATTTCAGAGCTTGGGTTTTAGCAACGACGCATCTCTATTTTCATCTGTGATAACCAATGCAGCACTTG TTGTTGGTGCACTCATTTCAATGGCTTTAGTAGACAAATTTGGCAGAAGAGCTTTCTTCTTGGAAGCCGGGACTGAAATGTTCTTCGTCATGATTGCTGT GACCATAACTTTGGCCTTGAAGTTCGGAGAAGGAAAGCCAATCCCCAAAGGAATTGGCATCTTCCTTGTGATTGCCATTTGTTTGTTTGTCCTGGCTTAT GGAAGGTCATGGGGTCCTCTTGGATGGCTTGTTCCAAGTGAGCTCTTCCCCTTGGAGATGAGGTCTGCTGGTCAGAGTGTGGTGGTCTGCGTCAACATGA TCTTCACAGCTTTGATAGCACAGTGTTTCCTTATCTCACTCTGTCACCTTAAATATGGAATTTTCTTGCTGTTCGGTGGTTTAATTTTCATCATGAGTGC CTTCATCTTCTTCTTCCTGCCAGAAACAAAGCAAGTACCGATTGAGGAGGTGTATCTTCTCTGGCAAAACCACTGGTTCTGGAAGAGGATAGTGGGAACC GGGCCTTCGTCAGCATCACAAGTATAG
AA sequence Show only first row Show all	>Potri.018G085200.1 pacid=42800987 polypeptide=Potri.018G085200.1.p locus=Potri.018G085200 ID=Potri.018G085200.1.v4.1 annot-version=v4.1 MAGGFVDAGNLKRAHLYEYKITGYFIFACIVAALGGSLFGYDLGVSGGVTSMDDFLVEFFPDVYRRKHAHLRETDYCKYDDQVLTLFTSSLYFAALVSTF GASYVTRSRGRRASILVGAVSFFTGALVNAFAKNITMLIIGRCFLGAGIGFSNQAVPLYLSEMAPAKVRGAVNQLFQLTTCLGILVANFINYGTEKIHPW GWRLSLGLATVPATIMFVGGIFLPETPNSLVEQGKLEEARRVLEKVRGTTRVDAEFADLVDASNEARAIKHPFRNLLARKNRPQFIIGALAIPAFQQLTG MNSILFYAPVLFQSLGFSNDASLFSSVITNAALVVGALISMALVDKFGRRAFFLEAGTEMFFVMIAVTITLALKFGEGKPIPKGIGIFLVIAICLFVLAY GRSWGPLGWLVPSELFPLEMRSAGQSVVVCVNMIFTALIAQCFLISLCHLKYGIFLLFGGLIFIMSAFIFFFLPETKQVPIEEVYLLWQNHWFWKRIVGT GPSSASQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.018G085200 [exp]	0	1	RCSTG.1
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.010G203400 [exp]	6.32	0.8581
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	8.36	0.8541
AT3G18150			RNI-like superfamily protein (...		Potri.001G322900 [exp]	8.60	0.8166
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	8.83	0.8589
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.005G113100 [exp]	9.53	0.8460
AT5G64830			programmed cell death 2 C-term...		Potri.007G080500 [exp]	11.04	0.7909
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	13.96	0.8908
AT5G01230			S-adenosyl-L-methionine-depend...		Potri.019G056300 [exp]	15.23	0.8605
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	23.36	0.8373
AT2G38340	AP2_ERF	DREB2E, DREB19	dehydration response element-b...		Potri.016G126100 [exp]	25.61	0.8434	Pt-DREB2.6

Compare expression of checked genes

Potri.018G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.