Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19670 693 / 0 Exostosin family protein (.1) AT4G32790 528 / 0 Exostosin family protein (.1) AT5G25820 520 / 2e-177 Exostosin family protein (.1) AT4G16745 487 / 5e-166 Exostosin family protein (.1.2) AT5G11610 469 / 5e-159 Exostosin family protein (.1.2) AT5G37000 443 / 1e-148 Exostosin family protein (.1) AT5G03795 314 / 4e-99 Exostosin family protein (.1) AT3G07620 295 / 2e-92 Exostosin family protein (.1) AT5G25310 286 / 7e-89 Exostosin family protein (.1) AT5G11130 273 / 4e-84 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238900 [exp] 605 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 580 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 560 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 560 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 491 / 2e-167 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 333 / 1e-106 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 318 / 5e-101 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 317 / 5e-101 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 302 / 7e-95 AT5G25310 518 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034951 [exp] 784 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 783 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 727 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 726 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 550 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 548 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 545 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 474 / 1e-160 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 467 / 2e-158 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10025178 [exp] 332 / 1e-106 AT5G03795 471 / 5e-163 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.018G085500.2 pacid=42801186 polypeptide=Potri.018G085500.2.p locus=Potri.018G085500 ID=Potri.018G085500.2.v4.1 annot-version=v4.1 ATGGAACTTTGCTTTCAGCTTCCTAAGTTCTTCCAGAATGTAAACCGAAGATGGCTTCTTGTACTCGGGGTGGTGGCTGTAACTCACACACTGTTTCAGT TTCTATTGCTTCCTTATGGAAATGCTCTTCGCTCTCTGTTTCCCAATGTAAATGATTCAATGTATGATAAAAGCAGCTTCGCTGTCATACAGTCTTCCAA AAAGTCTGTCATGGTCCGCTACCCTCTCACGGTTGATAAGTCGAGCTTGAATAATTATTTCAAGTTTGATGGGGTGCTAGAAAACGCTGATGATTCCAAT GGTGGTGTAGAAGAGGGTCACGATGACGGAACAAAGAAAAATACTGAAGACACAGATCATGACTTTTCATCAGAGGAAGGGGACATGGAGGTCCTGGATG ATGTCATCCAGCTTGAGGTGGATAGAGATTTGGAAGATGATTTTCCATCTGAGGATGTTAAGGATAGACATGAGACTTTTGCATCGGGCGGAGTCAAAAC TGAAGAAAGTAACCCTGTCCTGAAATTGGCAAATGAAGCCAGATTCAACCTTCCTCTTGAGAGGAATGTGAAATCAGACCATGATATTCCGACAGACAAT GTACTGCAACAAAATAAAAGTCAAGCACATAAAGAGTTTGAGCATGTGAACTCTACTCTTCCTGTAGACTCTCAAGCAGTGGCTTCATCCACAAAGGCCA CCTATTTGAAGTCAAATGGAAGTTCCTCTATTGGTCCTGCTGCCTTAAAAAGCGATTCTGCAGCCGCAAAAAATTATTCTGTAGTGCTGGCCAAACCTGG GAAAAAAAAGATGAGGTGTGAGATGCCACCAAAATCAGTAACATTAATAGATGAAATGAACAGTATTTTAGTGCGGCACCGTAGGTCTTCACGCTCGATG AGACCAAGATGGTCCTCTGCACGTGATCAGGAGATTTTGGCTGCCAGGTCCCAGATTGAAAGTGCTCCAGCTGTGGTGCATGATCGAGATCTTTATGCTC CTCTCTTTCGAAATGTTTCCAAGTTTAAAAGGAGTTACGAACTCATGGAACGCACCCTGAAGATCTATATCTACAAGGATGGAAAAAAACCCATTTTTCA TCTACCAATATTGAAGGGACTGTATGCCTCAGAAGGATGGTTTATGAAACTTATGCAGGGAAATAAGCATTTTGTAGTGAAAGACCCCCGAAAGGCTCAT CTGTTTTATATGCCATTCAGTTCGCGAATGCTAGAATACACCCTCTATGTACGTAACTCTCACAATAGGACAAACCTTCGCCTATATATGAAAAGATACG CAGAAAGCATTGCAGCTAAATATTCGTTCTGGAATAGAACAGGTGGAGCAGATCATTTCCTTGTTGCCTGCCATGACTGGGCTCCATATGAAACAAGGCA CCATATGGAACATTGCATCAAAGCATTGTGCAATGCTGATGTCACTGCTGGCTTCAAAATAGGGAGGGATGTGTCTTTTCCTGAAACATATGTTCGGTCT GCTAGAAATCCCCTCCGAGATCTTGGAGGAAAACCGCCTTCTCAGAGAAACATTCTTGCCTTCTATGCTGGAAACATGCATGGTTACCTGCGTCCAATCT TATTGAAGTACTGGAAAGACAAAGATCCTGACATGAAGATCTTCGGTCCTATGCCTCCTGGTGTTGCAAGCAAAATGAATTACATCCATCACATGCAGAG AAGCAAGTATTGTATCTGTCCCAAGGGTTATGAGGTCAACAGTCCTCGGGTGGTTGAAGCCATCTTTTACGAGTGTGTACCTGTAATTATATCAGATAAC TTTGTGCCACCATTTTTTGATGTCCTGGATTGGGGAGCATTTTCATTAATCCTTGCAGAGAAAGACATATCCAACCTAAAAGAAATATTACTTTCGATTC CAAAGGAGAAGTATCTTCAAATGCAACTCGGGGTCCGGAAAGCTCAGCGACATTTTCTTTGGCATGCTAGCCCAATGAAGTATGATCTCTTCTACATGAC CCTCCATTCAATTTGGTATAATAGAGTCTATCAGATAAAACCTAGATAA
AA sequence Show only first row Show all	>Potri.018G085500.2 pacid=42801186 polypeptide=Potri.018G085500.2.p locus=Potri.018G085500 ID=Potri.018G085500.2.v4.1 annot-version=v4.1 MELCFQLPKFFQNVNRRWLLVLGVVAVTHTLFQFLLLPYGNALRSLFPNVNDSMYDKSSFAVIQSSKKSVMVRYPLTVDKSSLNNYFKFDGVLENADDSN GGVEEGHDDGTKKNTEDTDHDFSSEEGDMEVLDDVIQLEVDRDLEDDFPSEDVKDRHETFASGGVKTEESNPVLKLANEARFNLPLERNVKSDHDIPTDN VLQQNKSQAHKEFEHVNSTLPVDSQAVASSTKATYLKSNGSSSIGPAALKSDSAAAKNYSVVLAKPGKKKMRCEMPPKSVTLIDEMNSILVRHRRSSRSM RPRWSSARDQEILAARSQIESAPAVVHDRDLYAPLFRNVSKFKRSYELMERTLKIYIYKDGKKPIFHLPILKGLYASEGWFMKLMQGNKHFVVKDPRKAH LFYMPFSSRMLEYTLYVRNSHNRTNLRLYMKRYAESIAAKYSFWNRTGGADHFLVACHDWAPYETRHHMEHCIKALCNADVTAGFKIGRDVSFPETYVRS ARNPLRDLGGKPPSQRNILAFYAGNMHGYLRPILLKYWKDKDPDMKIFGPMPPGVASKMNYIHHMQRSKYCICPKGYEVNSPRVVEAIFYECVPVIISDN FVPPFFDVLDWGAFSLILAEKDISNLKEILLSIPKEKYLQMQLGVRKAQRHFLWHASPMKYDLFYMTLHSIWYNRVYQIKPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19670			Exostosin family protein (.1)		Potri.018G085500 [exp]	0	1
AT5G63710			Leucine-rich repeat protein ki...		Potri.019G001800 [exp]	9.38	0.8891
AT2G44830			Protein kinase superfamily pro...		Potri.014G047500 [exp]	10.19	0.8885
					Potri.002G056400 [exp]	11.74	0.8888
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	15.68	0.8920
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	16.21	0.8972
AT3G18430			Calcium-binding EF-hand family...		Potri.003G030300 [exp]	22.97	0.8627
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	24.59	0.8849
AT1G76800			Vacuolar iron transporter (VIT...		Potri.005G190800 [exp]	27.92	0.8894
AT1G65810			P-loop containing nucleoside t...		Potri.008G142960 [exp]	30.28	0.8886
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	32.86	0.8882

Compare expression of checked genes

Potri.018G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.