Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44970 470 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G055900 [exp] 499 / 5e-173 AT2G44970 639 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011122 [exp] 566 / 0 AT2G44970 425 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042889 [exp] 483 / 2e-166 AT2G44970 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028185 [exp] 483 / 3e-164 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07819 [poplar] [flax] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.018G085600.1 pacid=42801471 polypeptide=Potri.018G085600.1.p locus=Potri.018G085600 ID=Potri.018G085600.1.v4.1 annot-version=v4.1 ATGGGAGATTTTTGTATCAAAGAAGAAATTAGTGATATCCCTTCAAGTAGGCACCAGTTTGATCATCCATCAAGTGAATGCGGCCTACTAGAAAGACATG GTTGCCAAATAAAGCATGTGGCACATAATGATGCTGTGAATAGTCTTTTGGTTGATTCTGTTGGATCGCCCTCATCATTGGATGACATTTTTACCTGCCT CTTAACATTGACTACATATTTAAGGCGTCGACTAGTTCATTTTATTGAGGATCTTATATACCAAGATGTCAATGGATACTCAGAGAGTTTTGTGGCCAGT TCTTCTGGACCGCATTCACATTCTTCAGGACACAACATCTATAGATCTAATGTCGAAGGTTTTTCATTGTTTTCTGAACATCATATTGCTAATAAGAGTC CTGAAATCCACAGAACAAGAGCGGCAGAAGTCAGGGAAGAGTTACTTGTAAATACCAGATACGAAGCTAGAACTGGTTGCAGTCGTCGAGGTGTTTCATT AATTATTCAAGGGTTGATGCTCCCATTGTTTGGTTTACGACTTGCCTGGAGGTTGGCATTGGCCTCCTGGAGATGTTCACTTTATTATATCAGATGTACA CAAGCTCAAGTTCTTAGCATTACATCTCGTGTTCGCAAAACTTTGCGTGGTTCGTCAGATGATATTGGATGGCTACAGCATACACGTGACATGGCTCCAG TGGAGGATGGTACAGTTAGATTCTTAGAGCTGCTTGAGAAAATAAGGAATGGAGAGCACAACCTTCCGAACTCATTTGTTTATTTATTAATACCAGGCCT TTTTAGTAATCACGGCCCCCTGTATTTTGTGGGTACTAAGAGATTCTTTTCTAAGATGGGTCTAGCTTGCCACATTGCAAAAATTCACAGTGAGGCATCA GTGGAGCATAATGCATGGGAGCTGAAGCAATATATTGAGGAGCTATATTGGGGTTCAGGCAAGCGTGTGATACTGCTTGGGCACAGCAAGGGTGGGGTTG ATGCTGCAGCTGCGTTGTCGATATACTCTTCTGACTTGAAAAACAAAGTTGCTGGACTGGCATTGGTACAGAGTCCATATGCTGGAACCCCCATAGCTTC TGACATTCTTCGTGAAGGCCAGATTGCTGACAAAGAAACTCGGAGGATCATGGAGCTTTTGATCTGCAAAATAATTAAGGGTGACATACGAGCATTGGAG GATCTCACGTATGATAAGCGGAGGGAATTCATCTCAAAGCACCAGCTTTCAAAGGAAATTCCTCTTATCTCTTTCCACTCGGAAGCAAGCATTGCTCCAG GTGTCCTTGCAACAATGACTCACATAGCACACGCAGAACTTCCTTGGCTTCCCCTCCCAAAGTTTGGGAGCGAGGAATCTGATGACTTCCAAGCAGGACA CCAGGTGCCAGTAGTGATTCCCGTATCTGCTGCTATGGCTGTGTGCGCACTCCACTTGCAGCTTAGGTATGGAGAGAAGAGTGATGGGTTAGTGACATGC CGTGATGCTGAAGTTCCAGGTTCAGTTGTAGTCAGGCCAGATAGGAAGCTGGATCATGCTTGGATGGTTTACTCTTCAAGAAAGAAGGATCCTAGTGAAC CTGATTCTTGTGAAATGTGCGAGGCTCTTTTGACTATGCTGGTGGAGCTTGGCAAGATGAAGCAAGAAAGAGATGTCTCCGGTGCCTTTTAA
AA sequence Show only first row Show all	>Potri.018G085600.1 pacid=42801471 polypeptide=Potri.018G085600.1.p locus=Potri.018G085600 ID=Potri.018G085600.1.v4.1 annot-version=v4.1 MGDFCIKEEISDIPSSRHQFDHPSSECGLLERHGCQIKHVAHNDAVNSLLVDSVGSPSSLDDIFTCLLTLTTYLRRRLVHFIEDLIYQDVNGYSESFVAS SSGPHSHSSGHNIYRSNVEGFSLFSEHHIANKSPEIHRTRAAEVREELLVNTRYEARTGCSRRGVSLIIQGLMLPLFGLRLAWRLALASWRCSLYYIRCT QAQVLSITSRVRKTLRGSSDDIGWLQHTRDMAPVEDGTVRFLELLEKIRNGEHNLPNSFVYLLIPGLFSNHGPLYFVGTKRFFSKMGLACHIAKIHSEAS VEHNAWELKQYIEELYWGSGKRVILLGHSKGGVDAAAALSIYSSDLKNKVAGLALVQSPYAGTPIASDILREGQIADKETRRIMELLICKIIKGDIRALE DLTYDKRREFISKHQLSKEIPLISFHSEASIAPGVLATMTHIAHAELPWLPLPKFGSEESDDFQAGHQVPVVIPVSAAMAVCALHLQLRYGEKSDGLVTC RDAEVPGSVVVRPDRKLDHAWMVYSSRKKDPSEPDSCEMCEALLTMLVELGKMKQERDVSGAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	0	1
AT4G20930			6-phosphogluconate dehydrogena...		Potri.001G465600 [exp]	2.00	0.8923
AT4G20350			oxidoreductases (.1.2)		Potri.013G161600 [exp]	4.24	0.8823
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	4.69	0.8803
AT5G03860		MLS	malate synthase (.1.2)		Potri.012G094532 [exp]	5.47	0.8920
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	5.47	0.8939
AT4G27190			NB-ARC domain-containing disea...		Potri.005G042900 [exp]	5.65	0.8853	Pt-RGA-II24.67
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	7.93	0.8510
AT5G57655			xylose isomerase family protei...		Potri.018G096049 [exp]	8.60	0.8260
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Potri.017G040800 [exp]	15.55	0.8502	Pt-BMY1.1
AT5G03860		MLS	malate synthase (.1.2)		Potri.015G092000 [exp]	17.66	0.8458

Compare expression of checked genes

Potri.018G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.