Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 491 / 2e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 478 / 2e-159 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 478 / 4e-159 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G27610 477 / 1e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01030 473 / 4e-157 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33170 478 / 2e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 467 / 1e-155 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 469 / 4e-155 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 474 / 8e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 466 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 530 / 1e-179 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G184800 [exp] 496 / 8e-165 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 491 / 8e-164 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 488 / 4e-163 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 478 / 3e-160 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 479 / 1e-159 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G164900 [exp] 475 / 3e-157 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 476 / 2e-156 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 468 / 4e-156 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012971 [exp] 997 / 0 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 521 / 4e-170 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 515 / 1e-167 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004892 [exp] 499 / 6e-166 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013540 [exp] 483 / 7e-161 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009437 [exp] 479 / 8e-160 AT1G71420 753 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 465 / 2e-153 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 465 / 2e-153 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 465 / 6e-153 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 462 / 3e-152 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.018G085800.4 pacid=42801220 polypeptide=Potri.018G085800.4.p locus=Potri.018G085800 ID=Potri.018G085800.4.v4.1 annot-version=v4.1 ATGAATTCCAAACTCAAGCTTCGCCAAGCAATAGACACACTGTACACTAACGGACCAGCAAGTCATGAATGCTACACTCGCCTTGCACTCGAATGCTTTC GAGCCAGTGATGTTGATCAAGCCAAGAGATTGAAATCCCACATGGACCTTCATTTGTTTAAACCCAATGACACTTTCATTCACAATCGTCTTCTCAACTT GTACGCAAAATCAGGAGAAATCTCTCATGCTCGGAAACTGTTTGATGAAATGACCCAAAGAGATAATTTCTCGTGGAATGCCATGCTTTCTTTGTATGCG AAATCCGGGTTAGTCGAGGATTTAAGGGTTATCTTTGATAACATGCCTTCTCGTGACTCAGTATCGTATAATACGGTGATTTCAGGTTTTGCAGGAAATG GGCGTGGAGGCCCGGCACTGGGTGTTTTTTTTAGGATGCAGAAGGAAGGGCTTAAGCCCACAGAGTATACCCATGTCAGTGTTTTAAATGCGTGTACGCA ATTGTTGGATTTAAGGAGAGGAAAGCAGATTCATGGAAGGATTATTATTTGTAATTTAGGTGGCAATGTGTTTGTTTGTAATGCTTTAACTGATTTGTAT GCGAGGTGCGGGGAGATTGATCAGGCAAGGAGGTTGTTTGATAGAATGGTGATTAGGAATGTGGTAACATGGAATTTGATGATTTCTGGGTACTTGAAAA ACAGGCAGCCTGAGAAATGCATTGATTTGTTTCATGAAATGCAGGTGTCAAATTTGAAGCCCGATCAGGTTACAGTTTCAAGTGTTCTTGGTGCATATAT TCAAGGTGGGTATATTGATGAAGCAAGGAATTTGTTTGGTGAGATTAGAGAGAAGGATGAAGTTTGTTGGACAATAATGATTGTGGGTTGTGCGCAAAAT GGAAAGGAAGAGGATGCGTTGCTGTTGTTTAGTGAGATGTTGTTAGAGAATGCCAGGCCAGATGGTTATACTATCTCGAGTGTGGTTAGATCGTGTGCCA AATTAGCTTCTTTGTATCACGGTCAGGTTGTTCATGGAAAAGCATTTCTTATGGGAGTTAATGATGATTTGCTTGTGGCTAGCGCTCTTGTTGATATGTA TTGCAAATGTGGAGTCACTAGGGATGCTTGGACTATATTTAGTACGATGCAAACTCGGAATGTGGTTTCTTGGAATTCCATGATTGGGGGTTATGCATTA AATGGACAGGATTTGGAGGCCTTGTCCCTTTATGAGAATATGTTGGAAGAAAATTTGAAACCAGATAGTGTAACGTTTGTGGGTGTTCTATCTGCTTGTG TCCATGCTGGTTTGGTTGAAGAAGGGAAGGAATATTTTTGTTCAATGAGTGATCAACATGGGTTAGAACCTACTCCGGATCATTATGCGTGCATGGTCAA TCTCTTTGGACGTTCAGGGCACATGGATAAAGCAGTTGACTTGATTAGTAGTATGTCGCAGGAACCAAATTCCTTAATTTGGACTACGGTTTTATCAGTT TGTGTAATGAAGGGTGACATTAAACATGGGGAGATGGCGGCTAGGTGCCTCATTGAATTGAATCCATTCAATGCTGTGCCTTACATCATGTTGTCTAACA TGTATGCTGCTCGTGGAAGATGGAAAGATGTTGCTTCTATTAGATCTCTAATGAAGTCCAAGCATGTTAAAAAGTTTTCTGCTTACAGTTGGATTGAGAT TGACAATGAAGTCCATAAGTTTGTAGCAGATGATCGAACTCATCCAGATGCAAAAATAATTCATGTGCAACTTAACAGATTGATAAGGAAACTGCAGGAA GCAGGTTTTAGTCCTAATACAAACTTGGTTCTACATGATTTTGGGGAGGATGAGAAACTTGAATCCATCAATTACCACAGTGAAAAACTTGCTCTTGCAT ATGGTTTAATCAAAAAGCCTCATGGAGTAACACCTATAAGGATTATAAAGAACATTCGCACTTGTGCAGACTGCCATATATTTATGAAATTTGTATCTAA CATCACCAGAAGACCTGTCATCTTGAGAGATTCAAACAGATTCCATCATTTTGTCGAGGGGAAATGCTCCTGCAAGGACTACTGGTAA
AA sequence Show only first row Show all	>Potri.018G085800.4 pacid=42801220 polypeptide=Potri.018G085800.4.p locus=Potri.018G085800 ID=Potri.018G085800.4.v4.1 annot-version=v4.1 MNSKLKLRQAIDTLYTNGPASHECYTRLALECFRASDVDQAKRLKSHMDLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYA KSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFFRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLY ARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTVSSVLGAYIQGGYIDEARNLFGEIREKDEVCWTIMIVGCAQN GKEEDALLLFSEMLLENARPDGYTISSVVRSCAKLASLYHGQVVHGKAFLMGVNDDLLVASALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYAL NGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSV CVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQE AGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	0	1
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	1.41	0.9534
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	3.46	0.9453
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	3.74	0.9489
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	6.00	0.9364
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	8.06	0.9369
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	8.36	0.9333
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	10.77	0.9405
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	10.95	0.9215
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	12.64	0.9197
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G106800 [exp]	12.96	0.9110

Compare expression of checked genes

Potri.018G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.