Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20010 1166 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 1159 / 0 Protein of unknown function (DUF810) (.1) AT2G33420 634 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 609 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 397 / 9e-122 Protein of unknown function (DUF810) (.1) AT4G11670 229 / 7e-62 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238200 [exp] 1248 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 1230 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 612 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 611 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 385 / 3e-117 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 304 / 2e-87 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034947 [exp] 1282 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 748 / 0 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 659 / 0 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012969 [exp] 620 / 0 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 597 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 560 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 511 / 9e-173 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008430 [exp] 406 / 2e-132 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 404 / 6e-132 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 384 / 2e-116 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [poplar] [flax] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Potri.018G085900.2 pacid=42800397 polypeptide=Potri.018G085900.2.p locus=Potri.018G085900 ID=Potri.018G085900.2.v4.1 annot-version=v4.1 ATGCCTCTTTCTTACCCTATTCAAGACTTTGATTCTCCTTTTGGGCATTTTGATTCTGAATTGTCGGATTCGGACCTCCGACATACTGCTTACGAGATCC TCATCGGAGCATGCCGGACATCTGGAACTAGGCCTTTGACTTATATTCCTCAGTCCGACAGGACTATTTCTCAATATAAGGTTTCGGCTGCTGCTGCTGC TGCTCCATCCCCGCCCCCGTCTTTGCAGAGGTCGCTCACGTCTTCAGCGGCGAGTAAGGTGAAAAAGTCGTTGGGGATGAGGTCTGGTTCTAAAAGGAGA CTTGGTGGTGGTGAATCGGTGGGGAATCAAGGGAGAGCGACGGTTGGGGAATTGATTAGGGTTCAAATGAGGGTCACGGAGCAGACTGATTCAAGAACTA GGCGAGCTATTTTGAGGATTGCTGCTGGTCAGCTTGGAAGGCGTGTAGAGTCGATGGTTCTGCCACTTGAACTATTGCAGCAGCTCAAGCCTGCAGATTT TCCTAATCAGAAAGAATACGAAGCATGGAAGAGGAGAAATTTGAAGCTTCTAGAAGCGGGGCTGCTTTTGCATCCTCACCTGCCACTGAACAAGGCAGAC GCTGCTCCACAGCGCCTCCACCAGATTATTCGTGGGGCATTAGATAAACCAATTGATTCCAGAAAGAACAGTGAATCGATGCAAGTTCTCCGCAGTGCTG TTATGTCTCTTGCATGTAGATCATTTGATGGGTCTGTTTCTGAAACTTGTCACTGGGCAGATGGGTTTCCGTTGAATCTCAGACTCTACCAATTGCTCTT AGATGCTTGCTTTGATGTTAATGATGAATCAATTGTTATTGAAGAGCTTGATGAGGTTTTAGAACTCATAAAGAAGACTTGGGGAATCCTTGGAATGAAC CAAATGTTGCACAATCTCTGTTTCCTGTGGGTTTTATTTTACCATTATGTTGCGACTGGCCAAGTTGAGGATGACCTGTTGTTTGCTGCCAATAATCTGT TGATGGAAGTCGAAAAGGATGCAAAGGCAAGCAAGGATCCAGAGTATTCCAAGATTTTGAGTTCGACATTGAGTTCAATATTGGGATGGGCAGAGAAAAG GCTTCTTGCTTACCATGATAGTTTCCATAGTGACAATACTGAATCAATGCAAAGCATTGTTTCTTTGGCAGTTATAGCAGCAAAAATACTGGAAGAAGAT ATCTCTCATGAGAATCGTAGGAAAAGGAAAGAAGTCAATGTTGCTCATGATAGGATTGACACTTTCATCAGATCATCATTGCGCTCTGCTTTTGCTCAGA AAATGGAGAAAGTTAAGGCTAGCAAACAGTTATCTAGTCAAAGGAAAAATCTCCCTCGCCTGTCTATTCTTGCACAAGAAATCAGTGAACTGGCTTTTAA TGAGAAGGCAATTTTTAGTCCCATACTGAAGAGATGGCACCCCCTTGCAGCAGGCGTAGCTGTAGCCACGCTTCATTCTTGCTATTGGAATGAGCTGAGG AAATTCATTTCGAGTATCAGTGAATTGACACCTGATGCTATTGAGGTGCTGAGGGCTGCTGACAAATTGGAGAAAGATATTGTGCAGATCGCAGTTGAAG ATGCAGTAGACAGTGATGATGGTGGGAAGTCAATAATCCAAGAGATGCCTCCTTATGAGGCTGAAGCTGTAATTGCCAACCTTGTGAAGTCATGGATAAA GACGAGAGCTGACAGACTGAATGAGTGGGTTGATAGAAATCTACAACAAGAGGTATGGAATCCACGGGCAAATAAAGAGCAGTTTGCTCCTTCTGCTGTT GAAGTTCTACGCAGTGTAGATGAAACTTTGGAGGCATTCTTCTTGTTGCCAATACCTATGCATGCAGTCTTGCTTCCTGATTTGGTCACTGGCCTTGACA GATGTTTGCAGAATTACATATTGAAGGCAAAATCTGGCTGTGGGACACGAGATACTTTCATTCCTACTATGCCTGCGTTAACTAGATGTACAACAGGATC CAAATTTCGTGTATTTAAGAAGGAGAAGTCACAAATAACCCAGAGGAGGAAATGTCAGGTTGGGACTGTGAATGGCGATAGCTCCCATGGGATACCACAG CTATGTGTACGTATGAATACTTTGCAGTATATTCGCACACAGTTGGAGGTTTTGGAGAAGAGGACTGTTATCCAGCTTAGGAATTCTAACGCTACCAATG CAAATCATTTTGCTGATGGAACAGGGAAAAAGTTTGAGTTGTCAAGATCTGCTTTTGTTGAATGTATCCAGCTTCTCTGTGAGGCAACAGCATACAAGGT TGTCTTTCATGAGCTGAGTCATGTTCTGTGGGATGGCCTTTATGTTGGAGAAGTTTCATCTTCTAGGATTGAGCCTTTCCTTCAGGAGCTTGAGCAATAT TTGGAAATTATTTCATCTACAGTACATGACAGAGTGAGAACACGTGTCATCACAGATGTTATGAAAGCTTCTTTTGATGGATTCCTGATGGTGTTGCTTG CTGGAGGCCCTGCTCGCGCTTTCACTCTTCAAGATTCTGAGATAATCGAGGAAGATTTCAAATTTCTCACAGATATGTTCTGGTCCAACGGAGATGGTTT GCCAACAGATTTAATTGATAAGTATTCAACCACAGTTAAAGATGTACTCTCCTTGTTTCGTATAGATTCTGTGAGCCTTGTTGAGCAATTCAGAAGTCTG TCATTCGAGAGTCATGGCTCTTCTGCTAAATCCAGATTGCCAATGCCTCCAACTTCAGGTCAATGGAATTCTACTGAACCAAACACAGTCTTGCGAGTTT TGTGTTATCGGAGTGATGAGACAGCTGCGAAGTTCCTAAAGAAGGCTTACAACCTGCCTAAGAAACTATAA
AA sequence Show only first row Show all	>Potri.018G085900.2 pacid=42800397 polypeptide=Potri.018G085900.2.p locus=Potri.018G085900 ID=Potri.018G085900.2.v4.1 annot-version=v4.1 MPLSYPIQDFDSPFGHFDSELSDSDLRHTAYEILIGACRTSGTRPLTYIPQSDRTISQYKVSAAAAAAPSPPPSLQRSLTSSAASKVKKSLGMRSGSKRR LGGGESVGNQGRATVGELIRVQMRVTEQTDSRTRRAILRIAAGQLGRRVESMVLPLELLQQLKPADFPNQKEYEAWKRRNLKLLEAGLLLHPHLPLNKAD AAPQRLHQIIRGALDKPIDSRKNSESMQVLRSAVMSLACRSFDGSVSETCHWADGFPLNLRLYQLLLDACFDVNDESIVIEELDEVLELIKKTWGILGMN QMLHNLCFLWVLFYHYVATGQVEDDLLFAANNLLMEVEKDAKASKDPEYSKILSSTLSSILGWAEKRLLAYHDSFHSDNTESMQSIVSLAVIAAKILEED ISHENRRKRKEVNVAHDRIDTFIRSSLRSAFAQKMEKVKASKQLSSQRKNLPRLSILAQEISELAFNEKAIFSPILKRWHPLAAGVAVATLHSCYWNELR KFISSISELTPDAIEVLRAADKLEKDIVQIAVEDAVDSDDGGKSIIQEMPPYEAEAVIANLVKSWIKTRADRLNEWVDRNLQQEVWNPRANKEQFAPSAV EVLRSVDETLEAFFLLPIPMHAVLLPDLVTGLDRCLQNYILKAKSGCGTRDTFIPTMPALTRCTTGSKFRVFKKEKSQITQRRKCQVGTVNGDSSHGIPQ LCVRMNTLQYIRTQLEVLEKRTVIQLRNSNATNANHFADGTGKKFELSRSAFVECIQLLCEATAYKVVFHELSHVLWDGLYVGEVSSSRIEPFLQELEQY LEIISSTVHDRVRTRVITDVMKASFDGFLMVLLAGGPARAFTLQDSEIIEEDFKFLTDMFWSNGDGLPTDLIDKYSTTVKDVLSLFRIDSVSLVEQFRSL SFESHGSSAKSRLPMPPTSGQWNSTEPNTVLRVLCYRSDETAAKFLKKAYNLPKKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	0	1
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Potri.001G167200 [exp]	1.00	0.7542
AT5G26160			unknown protein		Potri.006G224200 [exp]	5.19	0.7337
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	5.65	0.7503
AT5G23490			unknown protein		Potri.004G133700 [exp]	10.19	0.7231
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	18.43	0.7084
AT4G22990			Major Facilitator Superfamily ...		Potri.001G111400 [exp]	18.97	0.6474
AT5G22950		VPS24.1	SNF7 family protein (.1)		Potri.004G215500 [exp]	20.34	0.6675
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	21.49	0.6912
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.013G154900 [exp]	23.23	0.6601
AT2G37840			Protein kinase superfamily pro...		Potri.016G104900 [exp]	24.18	0.6919

Compare expression of checked genes

Potri.018G085900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.