Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19690 1155 / 0 STT3A staurosporin and temperature sensitive 3-like A (.1) AT1G34130 639 / 0 STT3B staurosporin and temperature sensitive 3-like b (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036300 [exp] 652 / 0 AT1G34130 1256 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.015G028300 [exp] 646 / 0 AT1G34130 1245 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.006G163566 [exp] 0 / 1 AT5G19690 209 / 9e-63 staurosporin and temperature sensitive 3-like A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011124 [exp] 1110 / 0 AT5G19690 1266 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Lus10043241 [exp] 1105 / 0 AT5G19690 1233 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Lus10041985 [exp] 662 / 0 AT1G34130 1312 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Lus10017990 [exp] 655 / 0 AT1G34130 1264 / 0.0 staurosporin and temperature sensitive 3-like b (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [poplar] [flax] GT-C PF02516 [poplar] [flax] STT3 Oligosaccharyl transferase STT3 subunit
Representative CDS sequence Show only first row Show all	>Potri.018G086000.1 pacid=42800947 polypeptide=Potri.018G086000.1.p locus=Potri.018G086000 ID=Potri.018G086000.1.v4.1 annot-version=v4.1 ATGGCGGACGGAGAGAGCTCGAAAGAGGCAACTGCAAGAACGCTGCGGAACGCGTTTGGCAATGTGCTCTCTTTCTTCATCCTCCTCTTGATTGGAGTTC TCGCCTTCTCGATCCGCCTTTTCTCTGTAATAAAGTATGAGAGTGTTATTCACGAATTCGATCCTTATTTCAATTACAGAGTTACTCAGTTTTTGACAAA GAATGGGATTTATGACTTTTGGAATTGGTTTGATGATCGAACCTGGTATCCTCTCGGCCGTGTGATTGGTGGAACTGTTTACCCTGGGTTGACCTTGACA GCAGGCACACTATGGTGGTTATTGAATTCTTTGAACATTCCATTGTCTGTCGAGACTGTTTGTGTATTCACTGCACCAATTTTCTCTGCATTTGCCTCAT GGGCAACTTACCTTTTGACCAAGGAAGTTAAGGGTACTGGTGCTGGACTGACAGCAGCTGTTCTTTTGGCCATGGTTCCATCATATATATCTCGATCTGT GGCTGGTAGCTATGACAATGAAGCTGTCGCCATATTTGCTCTTATCTTCACTTTCTATCTTTATATAAAGACATTGAATACAGGATCCCTCTTTTACGCT ACTTTAAATGCCTTGGCATACTTTTACATGGTCTGCTCATGGGGAGGGTACACCTTTATTATTAATCTAATTCCAATGCATGTGCTATTGTGCATTGTGA CTGGTCGCTATTCTTCCCGACTGTACATTGCATATGCTCCTCTTGTGGTTTTAGGAACGCTTTTAGCAGCTTTGGTGCCTGTTGTTGGTTTTAATGCAGT TATGACATCAGAACATTTTGCTTCATTTTTGGTTTTCATTATCATCCATGTGGTGGCTCTTGTGTACCATGTCAAAGGGAATCTCTCTCCAAGAATGTTT AAAGTGGCTGTTACGCTTGTTGTATCTGTGGGCCTGGTAGTGTGCTGTGCTATGATAGCTGTTCTAATAGCACTGGTAGCTTCTAGCCCAACAAAGGGAT GGAGCGGACGAAGTTTGAGCTTGCTTGATCCAACTTATGCAAGCAAGTATATACCAATCATTGCTAGTGTCAGTGAACATCAACCCCCTACTTGGCCATC TTACTTCATGGACATTAATGTTTTGGCTTTCTTGGTTCCAGCTGGGATTATTGCATGCTTTTTGCCTTTATCAGATGCAAGCTCCTTTGTTGTGCTTTAT ATTGTAACATCTGTATATTTTTCTGGTGTCATGGTGCGTCTTATGCTCGTGCTTGCTCCAGCAGCATGCATCATGTCTGGGATCGCCCTTTCTGAAGCTT TTAATGTCTTAACACGATCAATCAAGTTTCAGCTACCTGGATCATCAGGGACTTCCCAGGTTTTGTTGATTCTTTCGATGATTAAGTCAAGGGATACCAG TCTGAATACCGATGGAGAACACAATGACATAGCCAAGACTGAGAAAATGGACGAGACAGTAAAAGAACGACCATCAAAAAAGAACAGGAAGAAAGAAAAA GAGCCTGTGGAGAAGGCCTCTATAAGGTCCCGGATTGAAAGGAGACTTCTTGTTTTACCTTTGGAGGCATCTGTCATTGCTATTATCTTGCTCGTGTTGC TTGGCGCTTTCTATGTGGTTCATTGTGTCTGGGCAGCAGCTGAAGCTTATTCGGCACCTTCTATTGTTTTAACAACTTATTCACGAGATGGCGGTCTTCA TGTTTTTGATGATTTCAGAGAGGCTTATGCATGGCTAAGCCACAATACTGAGGTGGATGATAAAGTTGCATCATGGTGGGACTATGGTTATCAAACAACT GCAATGGCTAACCGCACTGTTATTGTTGACAATAACACCTGGAATAACACGCACATTGCAACCGTTGGTACTGCTATGTCTTCTCCTGAGAAGGCAGCCT GGGAAATCTTTAACTCCTTGGATGTAAAATATGTTCTAGTTGTCTTTGGAGGTCTTGTTGGCTACCCCAGTGATGACATTAATAAGTTCCTGTGGATGGT TCGTATAGGAGGGGGGGTGTTCCCTCATATCAAAGAACCTGATTATTTAAGAGATGGTCAATACCGGATCGATTCTCAGGCCACTCCAACCATGCTAAAT TGTCTCATGTACAAGCTATCATATTACAGGTTTGTGGAAACTGATGGTAAAGCCTTCGACAGAGTTAGGCAGACAGAAATTGGGAAGAAGTACTTCAAAC TTACCCATTTTGAGGAGGTATTCACAACTCACCATTGGATGGTTCGCATTTACAAATTGAAACCTCCAAAGAACAGGATTCGAGGGAAGACCAAAAAATC GAAATTGAAAGCAAGCTCAACTTCTAGCTCAAAAAGAAGCGCAGCAGGAAAGAGAAACCCATGGCACTAG
AA sequence Show only first row Show all	>Potri.018G086000.1 pacid=42800947 polypeptide=Potri.018G086000.1.p locus=Potri.018G086000 ID=Potri.018G086000.1.v4.1 annot-version=v4.1 MADGESSKEATARTLRNAFGNVLSFFILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLT AGTLWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGTGAGLTAAVLLAMVPSYISRSVAGSYDNEAVAIFALIFTFYLYIKTLNTGSLFYA TLNALAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVFIIIHVVALVYHVKGNLSPRMF KVAVTLVVSVGLVVCCAMIAVLIALVASSPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFLPLSDASSFVVLY IVTSVYFSGVMVRLMLVLAPAACIMSGIALSEAFNVLTRSIKFQLPGSSGTSQVLLILSMIKSRDTSLNTDGEHNDIAKTEKMDETVKERPSKKNRKKEK EPVEKASIRSRIERRLLVLPLEASVIAIILLVLLGAFYVVHCVWAAAEAYSAPSIVLTTYSRDGGLHVFDDFREAYAWLSHNTEVDDKVASWWDYGYQTT AMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDSQATPTMLN CLMYKLSYYRFVETDGKAFDRVRQTEIGKKYFKLTHFEEVFTTHHWMVRIYKLKPPKNRIRGKTKKSKLKASSTSSSKRSAAGKRNPWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19690		STT3A	staurosporin and temperature s...		Potri.018G086000 [exp]	0	1
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	1.41	0.9503
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.007G031000 [exp]	2.00	0.9353
AT1G34130		STT3B	staurosporin and temperature s...		Potri.015G028300 [exp]	4.89	0.9165
AT5G11560			catalytics (.1)		Potri.018G039800 [exp]	5.38	0.8908
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.001G183500 [exp]	9.48	0.8907
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	11.87	0.9278
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	14.07	0.9054
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	15.16	0.9077
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	15.87	0.9243
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	19.23	0.9191

Compare expression of checked genes

Potri.018G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.