Plant FIBer expression Database

Potri.018G086100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G77180 749 / 0 SKIP chromatin protein family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G163700
[exp]
958 / 0 AT1G77180 714 / 0.0 chromatin protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039685
[exp]
791 / 0 AT1G77180 826 / 0.0 chromatin protein family (.1.2.3)
Lus10027157
[exp]
507 / 2e-176 AT1G77180 541 / 0.0 chromatin protein family (.1.2.3)
Lus10027158
[exp]
231 / 6e-73 AT1G77180 227 / 5e-72 chromatin protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02731 SKIP_SNW SKIP/SNW domain
Representative CDS sequence
>Potri.018G086100.2 pacid=42800872 polypeptide=Potri.018G086100.2.p locus=Potri.018G086100 ID=Potri.018G086100.2.v4.1 annot-version=v4.1
ATGGCGGCTTTAAAGGAATTACTGCCTCCGGCGAAATCAACCAGCGCAACTTATTATGATCATTCAAATGATCCGTGGTTCAAGCAGAGGTTTAGTTCAT
CTGAGGTTGAACAATCTGCTGGTGGTGGTGGGATCAATTATAAACCTGTACCTCTTTACTTGCAGCGGAAGGGTTTTGTTCCCAGGAAAGTTGAAGATTT
TGGAGATGGGGGTGCGTTTCCAGAGATTCATGTTGCGCAGTACCCTCTTGATATGGGTAGGAATAAGTCTGCGAAACCTGGGTCCAAGATTTTGGCTTTG
ACTGTTGATGCTCATGGGAATGTTGCGTATGACGCTATTGTGAGACAGAATGAGAATGCTAAGAAGATTGTGTATTCTCAGCATAAGGATTTGATTCCGA
AGATTTTGAGGAGTGAGGAAGAGGGAGATGAGGATGGGGATGGGGATGGGGATGAGGAATTGCAGAAAGAGATCGAGGACACTACGCTGGAAACTAAAGC
TGCGCTTGAAAAGATTGTGAATGTCAGATTGAGTGCAGCGCAGCCGAAGAATGTGCCCAAACAGTCTTCGGATTCCAAGTATATAAAGTACAAGCCTTCG
CAACAGTCGGCAGCGTTTAACTCGGGTGCAAAAGAGAGGATTATTAGAATGGTGGAGATGCCGGTGGACCCGCTTGAGCCACCTAAGTTCAAGCATAAGA
GGGTTCCAAAGGCATCGGGATCACCACCTGTGCCAGTTATGCACTCGCCACCTCGACCTGTGACCGTGAAGGATCAGCAGGATTGGAAAATCCCACCTTG
TATCTCAAATTGGAAGAACCCTAAGGGCTACACGATTCCTCTTGATAAGCGTCTGGCTGCTGATGGAAGAGGTTTGCAGGATGTTCAAATTAATGATAAT
TTTGCTAAGCTGTCAGAAGCCCTTTATGTTGCTGAGCAAAAGGCTAGAGAAGCTGTTGCTATGAGATCCAAGGTTCAAAAGGAGATGATGATGAAGGAGA
AGGAAAGGAAAGAGCAGGAGTTGCGGGCATTAGCTCAGAAAGCTCGTTCTGAGAGAACTGGTGCTGCACCCCCACCGTCTGCTCCAGTCCCATCAGAGAG
GGGTGCAATGGATGATGTTGACATGAGAGGGGATTATGAGCATGTGAAGGACAGGGAGAGGGATGCCCCAAAGGAGACAAGGGAAGAGAGGGAAGAGAGG
CTGCGGCGCGAGAAAATTCGAGAGGAGCGCCGTCGAGAAAGGGAGAGAGAAAGAAGATTGGAAGCAAAAGATGCTGCAATGGGTAAGAAGAGCAAGATCA
CTAGAGATAGAGATCGTGACATCAGCGAGAAGGTTGCTCTTGGTATGGCCTCTACTGGAGCTGGAAAAGGGGGAGAAGTTGCATATGATCAAAGGTTGTT
CAACCAAGAGAAAGGAATGGATTCTGGTTTTGCTGCTGATGATCAATACAGTGTGTATGATAAAGGCCTTTTCACGGCTCAGCCCACACTTTCAACTCTA
TACCGGCCGAAGAAAGATGTTGATGCTGAAATGTATGGAGGCGCAGATGAGCAATTAGATAAGATAATGAAGACAGAACGATTCAAACCTGACAAGGAAT
TTGCTGGTACTTCACAGAGGACCGGTCCACGTGACAGGCCAGTTGAGTTTGAGAAGGATGAAGAAGAAGCTGATCCATTTGGTCTGGATCAGTTCTTGAC
TGAAGTAAAGAAGGGTAAGAAACCGACAGACAAAGTTGGTACTGGTGGCACAATGAGAGCTAGTGCAGGATCTTCAATGCGAGATGGCCATGATGGAGGC
TCTGGTAGAACTCGTATTGGATTTGAGAGAGGGCGTTAG
AA sequence
>Potri.018G086100.2 pacid=42800872 polypeptide=Potri.018G086100.2.p locus=Potri.018G086100 ID=Potri.018G086100.2.v4.1 annot-version=v4.1
MAALKELLPPAKSTSATYYDHSNDPWFKQRFSSSEVEQSAGGGGINYKPVPLYLQRKGFVPRKVEDFGDGGAFPEIHVAQYPLDMGRNKSAKPGSKILAL
TVDAHGNVAYDAIVRQNENAKKIVYSQHKDLIPKILRSEEEGDEDGDGDGDEELQKEIEDTTLETKAALEKIVNVRLSAAQPKNVPKQSSDSKYIKYKPS
QQSAAFNSGAKERIIRMVEMPVDPLEPPKFKHKRVPKASGSPPVPVMHSPPRPVTVKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVQINDN
FAKLSEALYVAEQKAREAVAMRSKVQKEMMMKEKERKEQELRALAQKARSERTGAAPPPSAPVPSERGAMDDVDMRGDYEHVKDRERDAPKETREEREER
LRREKIREERRRERERERRLEAKDAAMGKKSKITRDRDRDISEKVALGMASTGAGKGGEVAYDQRLFNQEKGMDSGFAADDQYSVYDKGLFTAQPTLSTL
YRPKKDVDAEMYGGADEQLDKIMKTERFKPDKEFAGTSQRTGPRDRPVEFEKDEEEADPFGLDQFLTEVKKGKKPTDKVGTGGTMRASAGSSMRDGHDGG
SGRTRIGFERGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G77180 SKIP chromatin protein family (.1.2... Potri.018G086100
[exp]
0 1
AT1G51450 ASH2R, TRO ARABIDOPSIS Ash2 RELATIVE, TRA... Potri.009G051400
[exp]
1.41 0.9023
AT3G60850 unknown protein Potri.014G070200
[exp]
2.00 0.8880
AT4G25210 GeBP DNA-binding storekeeper protei... Potri.009G088400
[exp]
2.82 0.8816
AT5G41790 CIP1 COP1-interactive protein 1 (.1... Potri.003G137400
[exp]
4.89 0.8404
AT4G10760 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAade... Potri.001G085200
[exp]
4.89 0.8878
AT5G41770 crooked neck protein, putative... Potri.003G137200
[exp]
5.09 0.8573
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
6.00 0.8773
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Potri.012G064100
[exp]
7.81 0.8098
AT1G30460 C3HZnF CPSF30, ATCPSF3... ARABIDOPSIS THALIANA CLEAVAGE ... Potri.011G089901
[exp]
7.93 0.8770
AT3G62130 LCD L-cysteine desulfhydrase, Pyri... Potri.014G112700
[exp]
8.48 0.8738

Potri.018G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.