Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) AT5G22320 63 / 9e-11 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G78230 57 / 8e-09 Outer arm dynein light chain 1 protein (.1) AT1G07390 56 / 3e-08 AtRLP1 receptor like protein 1 (.1.2.3) AT4G03260 51 / 8e-07 Outer arm dynein light chain 1 protein (.1.2) AT3G47570 47 / 1e-05 Leucine-rich repeat protein kinase family protein (.1) AT1G74190 47 / 1e-05 AtRLP15 receptor like protein 15 (.1) AT2G17440 46 / 2e-05 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT5G05850 46 / 3e-05 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT2G34680 45 / 7e-05 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163900 [exp] 588 / 0 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G120700 [exp] 67 / 8e-12 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.004G199200 [exp] 65 / 2e-11 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.018G118035 [exp] 61 / 6e-10 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.011G090200 [exp] 59 / 4e-09 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.007G065000 [exp] 58 / 5e-09 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G164000 [exp] 56 / 2e-08 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.002G097800 [exp] 56 / 3e-08 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.001G357700 [exp] 54 / 1e-07 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012715 [exp] 443 / 2e-157 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 390 / 2e-137 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10010892 [exp] 86 / 1e-20 AT5G19680 104 / 2e-28 Leucine-rich repeat (LRR) family protein (.1) Lus10013308 [exp] 70 / 6e-13 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 68 / 2e-12 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10000900 [exp] 60 / 8e-10 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10020932 [exp] 55 / 6e-08 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10033444 [exp] 55 / 6e-08 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 54 / 1e-07 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10035976 [exp] 53 / 2e-07 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G086200.1 pacid=42801135 polypeptide=Potri.018G086200.1.p locus=Potri.018G086200 ID=Potri.018G086200.1.v4.1 annot-version=v4.1 ATGGACGGCGCGCAACCACCAAACGGCTCAAACCCGGAGGCGGACGATCAAACGGTCGAAATCGATCCATCAAGCACCATCCTGGACCTAACCAGCTTTC AGCTTCATGATCTCAGCTCAGTGGATTTATCTTCGAGTCTCGCCGAGTTAGACCTGACCGCTAATCGGCTATCGAGCTTGGACCCTAGAATCGCTCATCT CTCGAACCTGAAAAAGCTCTCTCTCCGTCAAAACCTCATCGACGATGCTGCTGTTGAGCCTTTCTCTCGCTGGGACTCGTTATCCGCTCTCCAGGAGCTG GTGTTAAGGGATAATAAGCTAAAGAAAATACCGGATAGCGGCATATTCAAGAATCTTTTGGTTTTTGATGTTTCTTTCAATGAAATTACTTCGTTGCATG GATTGTCTAAAGTCTCAAATACCCTCAAGGAACTTTATGTATCTAAAAATGAAGTTACTAAGATAGAGGAGATTGATCACCTTTATCAGTTGCAAATTCT CGAACTTGGTTCCAACAGATTACGGGTGATGGAGAGCATGCAAAATTTTACAAGTTTACAGGAGCTGTGGCTGGGAAGAAATCGTATCAAAGTAGTTAAT CTATGTGGGCTGAAATGCATCAAGAAGCTTAGCTTGCAAAGCAACCGTGTAACTTCTATGAAAGGGTTTGAGGAATGTGTTGCTTTAGAAGAACTGTACT TGAGCCATAATGGTATTGCCAAAATGGAAGGCTTGTCAACCTTGGTCAACCTCCGTGTACTCGATGTATCATCTAACAAGCTAACTTCAGTGAATGATAT TCAGAACCTTACCCAGTTAGAGGATCTGTGGCTCAATGACAACCAAATAGAATCACTTGAAGGCGTTTCTGAGGCAGTCGTCAGTTCAAGAGAGAAACTA ACAACTATCTACCTTGAAAACAATCCATGTGCAAAGTCTACAAGCTACTCTGCCTTTTTGAGACAGATTTTTCCAAATATTCAGCAAATTGACTCCAGTG TGTTTGCTTAG
AA sequence Show only first row Show all	>Potri.018G086200.1 pacid=42801135 polypeptide=Potri.018G086200.1.p locus=Potri.018G086200 ID=Potri.018G086200.1.v4.1 annot-version=v4.1 MDGAQPPNGSNPEADDQTVEIDPSSTILDLTSFQLHDLSSVDLSSSLAELDLTANRLSSLDPRIAHLSNLKKLSLRQNLIDDAAVEPFSRWDSLSALQEL VLRDNKLKKIPDSGIFKNLLVFDVSFNEITSLHGLSKVSNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVMESMQNFTSLQELWLGRNRIKVVN LCGLKCIKKLSLQSNRVTSMKGFEECVALEELYLSHNGIAKMEGLSTLVNLRVLDVSSNKLTSVNDIQNLTQLEDLWLNDNQIESLEGVSEAVVSSREKL TTIYLENNPCAKSTSYSAFLRQIFPNIQQIDSSVFA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.018G086200 [exp]	0	1
					Potri.003G070000 [exp]	8.24	0.8291
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	9.00	0.7837
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	19.18	0.7743	Pt-IAA8.1
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.001G103100 [exp]	19.44	0.8206
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.009G168500 [exp]	20.78	0.8107
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	30.03	0.8018
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	36.63	0.7665
AT4G31830			unknown protein		Potri.018G106300 [exp]	38.14	0.8147
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.005G058000 [exp]	42.66	0.7963
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.018G046100 [exp]	43.63	0.8044

Compare expression of checked genes

Potri.018G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.