Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HBT.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20000 1147 / 0 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 454 / 1e-149 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 117 / 2e-27 CDC23, APC8 anaphase-promoting complex subunit 8 (.1) AT1G78770 54 / 3e-07 APC6 anaphase promoting complex 6 (.1) AT4G37460 48 / 2e-05 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04240 47 / 5e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164000 [exp] 1397 / 0 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.012G075000 [exp] 119 / 6e-28 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.017G065600 [exp] 82 / 3e-18 AT2G20000 74 / 2e-16 HOBBIT, CDC27 family protein (.1) Potri.001G389300 [exp] 62 / 1e-09 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1) Potri.011G108800 [exp] 61 / 2e-09 AT1G78770 907 / 0.0 anaphase promoting complex 6 (.1) Potri.019G025600 [exp] 53 / 6e-07 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 51 / 2e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G170000 [exp] 48 / 3e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.010G065400 [exp] 45 / 0.0002 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012968 [exp] 1199 / 0 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10034945 [exp] 842 / 0 AT2G20000 801 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10042152 [exp] 123 / 3e-29 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004242 [exp] 122 / 1e-28 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10030525 [exp] 58 / 2e-08 AT1G78770 847 / 0.0 anaphase promoting complex 6 (.1) Lus10012876 [exp] 57 / 4e-08 AT1G78770 806 / 0.0 anaphase promoting complex 6 (.1) Lus10003576 [exp] 50 / 6e-06 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001406 [exp] 47 / 5e-05 AT4G37460 1271 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033033 [exp] 46 / 0.0001 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10021336 [exp] 45 / 0.0002 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF12895 [poplar] [flax] ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 CL0020 [poplar] [flax] TPR PF14559 [poplar] [flax] TPR_19 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.018G086300.1 pacid=42801734 polypeptide=Potri.018G086300.1.p locus=Potri.018G086300 ID=Potri.018G086300.1.v4.1 annot-version=v4.1 ATGGAAGCGATACTAGTAGACTGTGTAAACCACAGTCTTCGCCATTTCATGCATCGAAACGCCATATTCATGTGCGAACGGCTCTGCGCCGAGTTCCCTT CCGAGACAAATTTGCAATTGTTAGCAGGATGTTATCTGCAAAATAATCAAGCATACTCTGCGTATCATATTCTAAAAGGAACACAAATGGCTCAATCCCG CTACTTGTTTGCGATATCATGCTTTCAAATGGATCTTCTAAATGAAGCTGAAGCTGCATTATGTCCTACAAATGAGCCTGGTTTAGAGGTTCCAAATGGT GCACCTGGGCACTACCTTCTTGGGCTTATCTACAGGTATACTGATAGAAGGAAAAGTGCCATCCATCACTTTAAGCAAGCTTTATCTATAGATCCTTTAT TCTGGGCTGCCTACGAGGAGCTTTGTATATTAGGTGCTGCTGAAGAAGCAGCTGCAGTTTTTGATGAAGCAGCTGCTCTTTGTATTCAAAAGCAGCACAT GAATCATGCATCAGCATCCCAGAACTTGAGCATATCCAATGAGGATCGTAATTTAGTTTCTGCTCGAAACTTTGGCTTGGAAGATGGAAGTCCAAGGCAG TCAAAACACCCACAAGGGAATAACCTAAGAGATATTCCTGGAAATTATCATGGAGCCACTACGTTAGGAGGATCTGCTAGTCAGCCTTCAAATGGTGGCC TTCCAAACCTGTCATTTTATAACACTCCTTCACCAATGGCCACACAGTTGTCGAGTGTTGCCCCACCACCACTGTGTAGAAACATGCAGCCAAATGGTTC CAATCCTAGCATGCCTGGTTTTGATAACAGTGCAAGGTCAACTTTGAATTCTAATATGCAGGCCCCTCGAAGAAAGTTTGTTGATGAAGGGAAATTGCGG AAGATTTCTGGGAGGTTATTTTCTGATTCTGGCCCTCGGCGAAGTACAAGGCTTGCCGCAGAAGCAGGATCCAACCAAAATACTAGTTCTACACTGGTTG CAGGGAATGGAACTAACAACTCTCCTAAATATCTTGGGGGTTCCAAGTTTAGTTCCATGGCAATACGTTCAGTGACAGTTCGCAAGGGACAGTCATGGGT CAATGAAAATTATGATGAAGGGATACGGAATGAGGCTTTTGATGATTCACGTGCAAATAATACATCATCAAATTGTAGTCTATCACTCACCGGGGATTCT AGATCTCTTGAAACAGAAGTAGCAACCATGCCCGTTGGTGGGGTTATCGCAAGTCCTTCATGTATCTTAAGTGGTGCTTTAGAAATATTAGGCCTCCTGA GAACTCTTGGGGAAGGTTATAGACTTTCTTGCATGTACAGATGTCAGGATGCACTGGATGTCTACATGAAACTACCACACAAGCATTATAATACAGGCTG GGTGCTTTGCCAGGTTGGAAAAGCATATGTTGAATTAGTGGATTATTTGGAAGCTGATAGAGCCTTCAGTCTTGCCCGGCGAGCATCACCTTACAGTTTA GAAGGATTGGATGTATATTCTACGGTTCTTTATCATTTGAAGGAAGACATGAAGTTAAGTTACCTGGCTCAAGAACTGATATCAACTGATCGTTTAGCTC CTCAATCTTGGTGTGCTATTGGAAATTGCTATAGTCTGCAGAAAGACCATGAAACTGCCTTGAAAAATTTTCAGCGAGCCGTACAGCTTGATTCAAGATT TGCATATGCACACACCTTGTGCGGTCATGAATATGTTGCCTTGGAGGATTTTGAGAATGGAATTAAGAGTTACCAGAGTGCCCTAAGGATAGATGCTAGA CATTACAATTCCTGGCATGGGCTTGGGATGGTCTATCTTCGGCAAGAGAAAAACGAGTTTTCTGAGCATCACTTCCGAATGGCTTTCCAAATAAATCCGT GTTCTTCGGTGATAATGTCTTATCTTGGGACTGCTTTACATGCCTTAAAGAGAAATGAGGAAGCTCTGGAGATGATGGAGAGGGCAATTTTAGCTGATAA GAAGAACCCTCTTCCCATGTATCAAAAGGCTAATATACTTGTGAGCTTGGAAAGCTTTGATGAAGCTTTAGAAGTCCTAGAGGAGCTGAAAGAGTATGCT CCTCGTGAAAGCAGTGTTTATGCTTTGATGGGTAAAATTTATAAGAGGCGTAACATGCATGAGAAGGCAATGTTTCACTTTGGTCTTGCTTTGGATTTGA AACCATCAGCGACTGACGTGGCTACAATAAAGGCTGCCATTGAGAAGCTGCATGTACCAGATGAATTAGAAGACAGCTTGTAG
AA sequence Show only first row Show all	>Potri.018G086300.1 pacid=42801734 polypeptide=Potri.018G086300.1.p locus=Potri.018G086300 ID=Potri.018G086300.1.v4.1 annot-version=v4.1 MEAILVDCVNHSLRHFMHRNAIFMCERLCAEFPSETNLQLLAGCYLQNNQAYSAYHILKGTQMAQSRYLFAISCFQMDLLNEAEAALCPTNEPGLEVPNG APGHYLLGLIYRYTDRRKSAIHHFKQALSIDPLFWAAYEELCILGAAEEAAAVFDEAAALCIQKQHMNHASASQNLSISNEDRNLVSARNFGLEDGSPRQ SKHPQGNNLRDIPGNYHGATTLGGSASQPSNGGLPNLSFYNTPSPMATQLSSVAPPPLCRNMQPNGSNPSMPGFDNSARSTLNSNMQAPRRKFVDEGKLR KISGRLFSDSGPRRSTRLAAEAGSNQNTSSTLVAGNGTNNSPKYLGGSKFSSMAIRSVTVRKGQSWVNENYDEGIRNEAFDDSRANNTSSNCSLSLTGDS RSLETEVATMPVGGVIASPSCILSGALEILGLLRTLGEGYRLSCMYRCQDALDVYMKLPHKHYNTGWVLCQVGKAYVELVDYLEADRAFSLARRASPYSL EGLDVYSTVLYHLKEDMKLSYLAQELISTDRLAPQSWCAIGNCYSLQKDHETALKNFQRAVQLDSRFAYAHTLCGHEYVALEDFENGIKSYQSALRIDAR HYNSWHGLGMVYLRQEKNEFSEHHFRMAFQINPCSSVIMSYLGTALHALKRNEEALEMMERAILADKKNPLPMYQKANILVSLESFDEALEVLEELKEYA PRESSVYALMGKIYKRRNMHEKAMFHFGLALDLKPSATDVATIKAAIEKLHVPDELEDSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.018G086300 [exp]	0	1	HBT.2
AT5G18590			Galactose oxidase/kelch repeat...		Potri.010G022000 [exp]	4.89	0.7461
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	7.21	0.8041
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	8.30	0.8112
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	8.48	0.8038
AT3G12590			unknown protein		Potri.008G052700 [exp]	13.56	0.7937
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	13.85	0.7753	RAD50.1
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Potri.001G346000 [exp]	17.74	0.7753
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	18.46	0.7734
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Potri.018G047500 [exp]	23.45	0.7739
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	23.47	0.7537

Compare expression of checked genes

Potri.018G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.