Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25660 766 / 0 Amidase family protein (.1) AT5G64440 124 / 4e-30 ATFAAH fatty acid amide hydrolase (.1) AT5G07360 100 / 7e-22 Amidase family protein (.1.2) AT1G08980 76 / 2e-14 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT4G34880 76 / 3e-14 Amidase family protein (.1) AT5G09420 68 / 6e-12 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT3G17970 68 / 9e-12 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G070300 [exp] 144 / 1e-36 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1) Potri.007G098600 [exp] 137 / 2e-34 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.001G285900 [exp] 122 / 3e-29 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.009G130400 [exp] 108 / 6e-25 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.015G109400 [exp] 108 / 8e-25 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.004G171300 [exp] 105 / 7e-24 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169300 [exp] 103 / 2e-23 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130700 [exp] 96 / 7e-21 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.009G130500 [exp] 96 / 9e-21 AT4G34880 500 / 2e-174 Amidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007361 [exp] 783 / 0 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 766 / 0 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10020468 [exp] 129 / 1e-31 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10007094 [exp] 125 / 2e-30 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1) Lus10016685 [exp] 120 / 2e-28 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10007095 [exp] 116 / 4e-27 AT5G64440 776 / 0.0 fatty acid amide hydrolase (.1) Lus10043019 [exp] 112 / 7e-26 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10027852 [exp] 110 / 1e-25 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10032519 [exp] 110 / 2e-25 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10025066 [exp] 103 / 4e-23 AT4G34880 484 / 3e-168 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.018G086350.1 pacid=42801927 polypeptide=Potri.018G086350.1.p locus=Potri.018G086350 ID=Potri.018G086350.1.v4.1 annot-version=v4.1 ATGCTATCCACACTGCAGCAGCCCCCTCGCTCCCTTTCTCGAATCCCTCTTCACCTTAAACCCCTCCGCTCTTTCTTCACCGTTGCGTCTGCTTCAGCTT CACAGGACCAATCCTCCCCGCCTTCATCTCAAATCCTCACCCTCCGCCGCGCCCTCCTCTCTCGCCAAACCACTGCCACCCAACTAGCTGAGTCCTACAT TTCCCGCCTCTCCCTCACCGAGCCCCACCTCCACTCCTTCCTCCACATCTCCGACACCCTTTTAAGAGATGCCCAGCTAATCGACCGCAAGATTGAAAAA GGAGAGGATGTCGGCCCCCTTGCTGGGGTCCTTGTTGGGGTCAAGGACAATATCTGTACTGCTGACATGCCTTCAACAGGTGGCTCCCGCATCCTGGAGA ACTACAAGGCTCCGTTCGACGCAACAGCGGTTAGGAGAGTGAAGGAGAAAGATGGGATTTTGATTGGAAAGACTAATTTGGATGAGTTTGGCATGGGAAG TACCACTGAAGCTTCTTCTTTCCAGGTGACTGCTAATCCATGGGACTTGTCTCGGGTGCCTGGTGGATCGTCAGGCGGATCGGCTGCAGCTGTTTCTGCT CGGCAATGTATGGTGTCACTTGGTAGTGATACTGGTGGAAGTGTAAGGCAACCAGCATCATTTTGTGGCGTTGTTGGATTGAAGCCAACATACGGGCGTG TCTCCAGATTTGGGCTCATGGCGTATGCATCATCACTTGATGTTATCGGATGCTTTGGTACTTCAGTTGCTGATACTGGCATCCTCCTTCACGTAATTTC TGGTCATGATAGATTTGATGCCACTAGTAGTAACCGAGAGGTTCCTGATTTTTCGTCGCAATTCACTTCTATAAATCTTGTGGAATCGAAACCATTGAAG GGGTTGAAGGTTGGTCTTATCCGTGAAACTCTTGAAGATGGTGTGGACAATGGAGTAAAATCTGCAATTAGTGGTGCCGCTTCACATCTTGAAGAACTAG GATGTACTGTGACGGAGGTCTCATTGCCATCTTTCTCCCTTGGTTTACCAGCCTATTATATTCTTGCTTCATCAGAATCATCTTCCAACTTATCACGTTA TGATGGTGTCAGGTATGGGAACCAAGTTTTTGCTGAAGAGTTAAATGCTCTTTATAATGATTCCCGAGCAAAAGGATTTGGTCCTGAGGTCCAAATGAGA ATCTTGATGGGAACATATGCGCTCTCAGCTGGTTATTATGACGCATACTACAAGCGTGCCCAACAGGTGAGGACCTTAATTCGGAAAAGCTTCAAGGATG CATTAGATGATAATGACATCCTAATTTCTCCTGTGGCGCCGTCTGCTGCATATAAAATTGGTGAAAAGAAAAACGATCCTTTGGCAATGTATGCAGGCGA CATTATGACTGTCAATGTTAACTTGGCAGGGCTACCTGCATTGGTTTTGCCATGTGGATTTGTTGAAGGGGGGCCTGTAGGACTTCCTGTTGGTCTTCAA ATGATTGGTGCAGCATTTGATGAGGCTAAGTTGCTCAAAGTTGGTCATATATTTGAGCAGACTCTTCAAGGTTGCAGATTTGTTCCTCCCATAGTAGCAG ATGATCTTGCATATTCCCAACAGTAA
AA sequence Show only first row Show all	>Potri.018G086350.1 pacid=42801927 polypeptide=Potri.018G086350.1.p locus=Potri.018G086350 ID=Potri.018G086350.1.v4.1 annot-version=v4.1 MLSTLQQPPRSLSRIPLHLKPLRSFFTVASASASQDQSSPPSSQILTLRRALLSRQTTATQLAESYISRLSLTEPHLHSFLHISDTLLRDAQLIDRKIEK GEDVGPLAGVLVGVKDNICTADMPSTGGSRILENYKAPFDATAVRRVKEKDGILIGKTNLDEFGMGSTTEASSFQVTANPWDLSRVPGGSSGGSAAAVSA RQCMVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVIGCFGTSVADTGILLHVISGHDRFDATSSNREVPDFSSQFTSINLVESKPLK GLKVGLIRETLEDGVDNGVKSAISGAASHLEELGCTVTEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQVFAEELNALYNDSRAKGFGPEVQMR ILMGTYALSAGYYDAYYKRAQQVRTLIRKSFKDALDDNDILISPVAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFVEGGPVGLPVGLQ MIGAAFDEAKLLKVGHIFEQTLQGCRFVPPIVADDLAYSQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25660			Amidase family protein (.1)		Potri.018G086350 [exp]	0	1
AT4G33760			tRNA synthetase class II (D, K...		Potri.009G084300 [exp]	3.46	0.9432
AT2G26340			unknown protein		Potri.006G220800 [exp]	4.24	0.9477
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Potri.005G161000 [exp]	9.69	0.9507
AT4G26370			antitermination NusB domain-co...		Potri.003G222900 [exp]	12.64	0.9416
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	14.42	0.9309	Pt-FTSZ.1
AT2G30695			unknown protein		Potri.013G125500 [exp]	15.81	0.9403
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	15.81	0.9352
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	17.74	0.9377
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	18.97	0.9394
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104900 [exp]	20.49	0.9317

Compare expression of checked genes

Potri.018G086350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.