Plant FIBer expression Database

Potri.018G086600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19950 626 / 0 GC1 golgin candidate 1 (.1.2)
AT1G18190 47 / 5e-05 GC2 golgin candidate 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G164350
[exp]
321 / 9e-106 AT2G19950 327 / 3e-108 golgin candidate 1 (.1.2)
Potri.015G039800
[exp]
45 / 0.0002 AT1G18190 509 / 1e-172 golgin candidate 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012966
[exp]
672 / 0 AT2G19950 716 / 0.0 golgin candidate 1 (.1.2)
Lus10034941
[exp]
644 / 0 AT2G19950 685 / 0.0 golgin candidate 1 (.1.2)
Lus10009060
[exp]
52 / 1e-06 AT1G18190 499 / 5e-169 golgin candidate 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09787 Golgin_A5 Golgin subfamily A member 5
Representative CDS sequence
>Potri.018G086600.3 pacid=42801489 polypeptide=Potri.018G086600.3.p locus=Potri.018G086600 ID=Potri.018G086600.3.v4.1 annot-version=v4.1
ATGGCGTCGTGGCTCAAGGTCGCAGAAGATTTGTTCGAAAATATGGATCGAAAAGCAAAACTGGTTGCGACTGAATTGTCGGATGAGTCTTCTGATCTTC
AACCACAAGCTTCTAATGGGCAAGGATCCGAACCGAAGAAGATGAAGTCAAGGATCGAGGGTGGAAAGAAGCTCTCAAACAAAGAATCTCCCCAAGCAAG
TAATGCTTCACAGGAGCTAACTTATATACAAATGCCACAACTAGACATCGCATCTGATAATGATAGGGCTACACTTTCTGTGGAAAATGAAGAGACCCTT
TCTAGCAAGACCATAGCCCAAACAAGCACTGAGAACCTACAGGATGCTGGAAGGGATGTTACTGTTGCTGGTGTGGACTCTGCAACATCAACTTCTAATG
GTGAGCTTCTCAATGAAAAGGATTCAGATGTTCCTGTAGAGCATCCCCCACCATTAGCTGTGAAAGAGACACAGGTTGTCAAAGAAGACCATCCTATTGA
TGATGGTAAAAATATCAAGTCAGGGGAGGCTGATGTTCCTGTAAAGACTGATCAAGAGAAATCGCAATCAACACTTACCAGCTCTCCTGCGCGTAAGGAA
AGCTCATTGAAAGGTGCCGACCTTGAAGTCGAACCTCTTGTCAATCAAAAGAAGCAACTGGAGAACAAAGCTGACACTTCTCCTATGACAGTGCAGGACC
AACTCGATGAGGCTCAAGGACTGCTGAAGATTGCAGTTTCCTCTGGTCAGTCAAAAGAAGCGAGGTTAGCTCGGGCTTGTGCTGGACTTCAAAGCCGCCT
TCAAGAATATAAATCTGAAAATGCACAGCTGGAAGAACTTCTCACTGCTGAGAGAGAGCTGACCAAATCATACGAGGGTCACATAAAGCAGCTACAGAAG
GACTTGTCAATATCTAAAAACGAAGTAGCTAGGATAGAGTCAAATATGGCTGAAGCTTTGGCAGTGAAGAACTCTGAAATCGAGGCACTTGTCAGTTCTA
TGGAGACAAGCAAGAAACAGCTTGCTTTATCTGAAGGAAATCTAGCTTCAATGCAGGCAAACATGGAGTCTATTATGAGAAACAGGGAACTGACAGAGAC
AAGGATGATGCAGGCTGTTCGAGAGGAGCTGGCTTCGGCTGAACGGAGGGCGGAAGAAGAACGTACAGCACATAATGCTACAAAAATGGCAGCTATGGAA
AGGGAAGTGGAATTAGAACATAGAGCAGTTGAGACATCCACTGCCCTTGCTAAGATGCAGAGAATTGCAGATGAAAGGACAACGAAGGCAGCTGAACTTG
AGCAGAAGGTGGCACTACTTGAGGTTGAATGTGCATCTCTTAATCAAGAGCTGCAAGATATGGAAGCTCGTGCTCGCCGTGGACAAAAGAAGTCCCCAGA
AGAGGCAAATCAAATGATTCAGATGCAGGCGTGGCAGGAAGAAGTGGAACGTGCACGCCAAGGTCAGAGAGATGCTGAGAGCAAGCTTTCTTATACAGAG
ACTGAAGCGCAGAAAATGAGAGTTGAAATGGCCGCCATGAAGAGGGATGCTGAGCACTATTCACGTCAGGAACATGTGGAGCTAGAGAAGCGCTACCGTG
AGCTAACTGACCTATTGTACTACAAGCAAACTCAGTTAGAAGCCATGGCTAGTGAAAAAGCAGCTGCAGAGTTTCAGTTGGAGAAGGAAGTAAAACGTCT
TCAAGAAGCACAGGTTGAGGCAGAAAGAAGTAGAGTTTCTCGCCGCACGTCGTCATCTTGGGAAGAAGACAATGAAATGAAGGAACTAGAGCCACTTCCC
TTGTATCACCGTCACATGGTTGGGGCAAGTATGCAGTTGCAAAAGGCAGCAAAAATATTGGATTCAGGGGCTGCCAGAGTCACTAGATTTTTATGGCGGT
ATCCAACTGCTAGACTTATTTTGCTTTTCTATTTGGTATTTGTCCATCTTTTCTTGATGTATTTACTGCATCGCCTTCAGGAACAAGCAGATAGTTTTTC
TGCTAGAGAAGTTGCTGAATCTATGGGTCTCGCTAACCATACCTTACCATAA
AA sequence
>Potri.018G086600.3 pacid=42801489 polypeptide=Potri.018G086600.3.p locus=Potri.018G086600 ID=Potri.018G086600.3.v4.1 annot-version=v4.1
MASWLKVAEDLFENMDRKAKLVATELSDESSDLQPQASNGQGSEPKKMKSRIEGGKKLSNKESPQASNASQELTYIQMPQLDIASDNDRATLSVENEETL
SSKTIAQTSTENLQDAGRDVTVAGVDSATSTSNGELLNEKDSDVPVEHPPPLAVKETQVVKEDHPIDDGKNIKSGEADVPVKTDQEKSQSTLTSSPARKE
SSLKGADLEVEPLVNQKKQLENKADTSPMTVQDQLDEAQGLLKIAVSSGQSKEARLARACAGLQSRLQEYKSENAQLEELLTAERELTKSYEGHIKQLQK
DLSISKNEVARIESNMAEALAVKNSEIEALVSSMETSKKQLALSEGNLASMQANMESIMRNRELTETRMMQAVREELASAERRAEEERTAHNATKMAAME
REVELEHRAVETSTALAKMQRIADERTTKAAELEQKVALLEVECASLNQELQDMEARARRGQKKSPEEANQMIQMQAWQEEVERARQGQRDAESKLSYTE
TEAQKMRVEMAAMKRDAEHYSRQEHVELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEVKRLQEAQVEAERSRVSRRTSSSWEEDNEMKELEPLP
LYHRHMVGASMQLQKAAKILDSGAARVTRFLWRYPTARLILLFYLVFVHLFLMYLLHRLQEQADSFSAREVAESMGLANHTLP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19950 GC1 golgin candidate 1 (.1.2) Potri.018G086600
[exp]
0 1
AT2G46180 GC4 golgin candidate 4 (.1) Potri.014G091300
[exp]
1.00 0.9356
AT2G28250 NCRK Protein kinase superfamily pro... Potri.009G010400
[exp]
1.73 0.9248
AT2G27900 unknown protein Potri.001G212600
[exp]
3.16 0.9279
AT1G61850 phospholipases;galactolipases ... Potri.004G018700
[exp]
3.74 0.9153
AT5G56510 APUM12 pumilio 12 (.1) Potri.003G222300
[exp]
4.89 0.9173
AT5G61970 signal recognition particle-re... Potri.012G106200
[exp]
5.19 0.9096
AT1G54920 unknown protein Potri.013G023600
[exp]
6.00 0.9011
AT4G38200 SEC7-like guanine nucleotide e... Potri.004G208400
[exp]
8.66 0.9024
AT1G49340 ATPI4K ALPHA, A... Phosphatidylinositol 3- and 4-... Potri.009G113700
[exp]
11.22 0.8975 Pt-ALPHA.12
AT5G65930 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN... Potri.001G455300
[exp]
12.48 0.8789

Potri.018G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.