Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1258 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1216 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1191 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28360 1187 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 1158 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT4G25960 945 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT3G28860 942 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 924 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT2G36910 897 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G62150 893 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G074000 [exp] 1267 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1217 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1127 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1127 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1094 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 1082 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1070 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1034 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 948 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012959 [exp] 1907 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1285 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1261 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 1257 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 1092 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 1080 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1075 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1051 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10005249 [exp] 925 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10030674 [exp] 925 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.018G087100.1 pacid=42801628 polypeptide=Potri.018G087100.1.p locus=Potri.018G087100 ID=Potri.018G087100.1.v4.1 annot-version=v4.1 ATGAATTCTCCAAAGAAGAATGAGAGGAGAGGAGAGGAGAGGAAGTCTATAGCCAATATCTTTAGATATGCAGATTGGAATGATATATTGCTTATGCTGC TGGGTACTGTTGGAGCTATTGGAGATGGCATGTCTACAAATTGCTTACTGGTGTTTGCCAGCCGCATAATGAATAGCTTGGGTTATGGTCAGACACGACA AGATAATTACAATTTCATGGTTGAGGTCCAAAAGTGCAGTTTAGACTTTGTGTACTTGGGATTAGCGGTCATGGTGATGGCTTTTATGGAGGGTTACTGT TGGAGTAAAACGAGCGAGAGACAGGTTTTGAAGATCCGATACAAGTATTTGGAAGCTATACTTCGACAAGAAGTTGGGTTCTATGATTCACAGGAAGCAA CTACTTCAGAGATCATCAACAGCATATCAAACGATACTTCTCTCGTACAAGAAGTACTAAGTGAAAAGGTGCCCATATTTTTGATGCACGCGTCTGTATT CTTCTCGGGACTTGCCTTTGCCACATACTTTTCATGGAGACTGTCTTTAGTAGCCTTCCCAACTCTTCTTCTTCTAATCATCCCTGGAATGATATACGGA AAATACCTTCTCTACTTGTCAAAGAAAGCTCGGACGGAGTATGGCAAAGCAAACTCCATCGTGGAGCGGGCATTAAGTTCCATCAAGACTATTTATTCAT TCACTGCCGAGAAGAGAATCATCGATAGGTATTCAGCAATATTGGATAGAACAACAAAATTGGGAATCAAGCAGGGTATAGCCAAAGGTCTTGCTGTTGG GAGTACAGGGCTTTCTTTTGCAATATGGGCTTTCCTTGCTTGGTATGGAAGTCATTTGGTCATGTACAAAGGAGAAAGTGGAGGGAGGATCTATGCTGCT GGCATTTCCTTCATATTGAGTGGACTATCCCTTGGAATTGCACTTCCTGATCTGAAGTACTTCACAGAAGCTTCTGTTGCTGCTACACGGATATTCAAAA GGATTGATAGAGTTCCAGAAATCGATAGCGAAGACACAAAAGGACGTGTATTAGACAAAATCCAAGGCCAAATTGTATTCCAGAATGTCAGTTTCACATA CCCTTGTCGTCCAGATGCCGTTGTTCTCAAAGATTTCAACCTGAAAGTTGAGGCAGGAAAAACAGTAGCTCTTGTTGGAGCAAGTGGGAGTGGAAAGTCC ACAGCAATTGCGTTACTCCAGCGTTTCTATGATGTTGATAGTGGCATTGTCAAGATTGATGGTGTTGATCTAAGAACATTGAATTTGAAATGGATAAGAG GACAAATGGGTCTTGTTAGTCAAGACCATGCTTTGTTTGGGACTTCAATAAAAGAGAATATCATGTTTGGGAAGCTTGATGCCACCATGGATGAAATCAT GGCTGCGGCTATGGCTGCAAATGCTCACAACTTTATAAGGCAGCTTCCAGAGGGGTATGAAACAAAGGTTGGTGAAAGAGGAGCACTCCTATCTGGGGGA CAAAAGCAGCGAATTGCCATTGCTAGAGCAATAATCAAGAACCCTGTGATTCTCCTACTTGATGAAGCAACCAGTGCTCTTGACTCTGAATCAGAAACAC TGGTCCAAAATGCACTTGATCAAGCCTCCATGGGAAGAACTACACTGGTTGTTGCACACAAGCTCTCTACAGTTCGAAATGCAGACCTCATTGCAGTCGT TGACAATGGTAGCATCATTGAAATAGGTTCCCACAATGATCTCATCAACATACAAAATGGCCACTATGCCAAACTGGCAAAGTTACAGAGACAATTCAGC TGTGATGAGCAAGAACAAAATCCTGAAATTCGCTTTTCTTCAGTTACTAGTAGTGCTGCTAGGCAAAGTACAGGAAAATCAAGTCCAACCATCTTTGCTT CACCATTGCCTGTTGATGATAGCCCAAAACCAGTGCACATCCCCGCGCCTTCCTTCTCTCGGCTTCTTTCTTTAAATGCCCCTGAATGGAAGCAAGGCCT GATGGGAAGTATTTCAGCTATAACATTTGGTGCTGTGCAACCTGTCTATGCGTTAACCGTTGGTGGAATGATTGCAGCTCTCTTTGCACCAAACCATGAT GAAGTGCGTGACCGAATACGTTTATACTCTTTAATATTCTGTTCTCTTTCCTTGTTCTCCATCATTATAAACCTTGTGCAACACTACAATTTTGCATACA TGGGTGAGAGGCTAACCAAGAGAATTCGATTGAGAATGCTAGAGAAGATCTTGGGTTTTGAGACAGCTTGGTTTGATGAAGAGGAAAACTCTAGCGGGGC TTTATGTCTAAGATTGAGCGCTGAAGCCTCCATGGTTAAAACCCTTATCGCAGACAGAGTTTGTTTATTAGTTCAAACCACTTCTGCAGTTACTATAGCA ATGATAATGGGGCTAGTCGTGGCTTGGAAGCTTGCAATTGTTATGATAGCGGTGCAACCCCTCACCATTCTGTGTTTCTACACGAAGAAAATTTTGCTGT CTAGTATTTCAACAAATTTTGTCAAGGCACAAAATCGAAGCACTCAAATTGCAGTGGAAGCGGTCTATAATCATAGAATTGTGACATCATTTGCGAGTGT GGGAAAGGTACTTCAACTTTTTGACGAGGCTCAGGAGGAACCAAGGAAGGAGGGCAGGAAAAAGTCGTGGCTAGCAGGAATTGGCATGGGATCTGCTCAG TGCCTAACTTTCATGTCATGGGCTCTAGACTTCTGGTTTGGAGGTACTCTAGTGGAAAAGGGAGAGATATCGGCAGGAGATGTGTTCAAGACATTTTTCA TTTTAGTGAGCACCGGGAAGGTTATAGCTGAGGCAGGGAGCATGACTTCAGATTTATCCAAAGGTTCAACAGCAGTGGCTTCTGTGTTCAAGATTCTGGA CAGGCAATCCCTGATTCCAGGTTCTTACCATGCCGGTGATGGAAGTAGTGGAACCAAGTTGGAAAAACTAGGTGGAAAGATAGAGATGAAGAAGATTGAT TTTGCATATCCAAGCCGGCCGGAGACCCTAATACTTCGGCAGTTCTGCTTGGAGGTGAAGCCAGGCACTAGCGTTGGACTAGTAGGAAAAAGTGGATGTG GAAAATCAACCGTGATTGGGTTGATTCAAAGATTCTACGATGTCGAGAAGGGGTCAGTAAGAGTAGATGGAGTGGACATAAGGGAACTAGACATCCAATG GTTCAGGAAGCGCACGGCTCTTGTTAGTCAAGAACCCGTGTTATATTCAGGAAGCATCCGGGAAAACATCATGTTCGGGAAGCTTGATGCGTCCGAGAAT GAGGTGGTGGAGGCTGCAAGAGCAGCGAATGCTCACGAGTTTATCTCATCACTCAAAGAAGGGTATGAAACTGAATGCGGTGAAAGAGGAGTGCAGCTAT CGGGAGGGCAAAAGCAAAGAATAGCAATAGCAAGAGCTATACTTCGCAACCCAACCATCCTATTACTAGACGAGGCAACAAGCGCTCTCGATGTGCAATC TGAGCAGGTTGTGCAAGAAGCACTGGACCGAATCATGGTTAGAAGGACGACAATTGTGGTAGCTCATCGGCTTAACACTATAAAGAATCTAGATTCCATT GCCTTCGTCGCCGATGGAAAGGTGGTGGAGCGAGGAACCTACGCTCAACTAAAGAACAAGAGAGGTGCCTTCTTTGACTTGGCTAGTCTTCAGACTTAG
AA sequence Show only first row Show all	>Potri.018G087100.1 pacid=42801628 polypeptide=Potri.018G087100.1.p locus=Potri.018G087100 ID=Potri.018G087100.1.v4.1 annot-version=v4.1 MNSPKKNERRGEERKSIANIFRYADWNDILLMLLGTVGAIGDGMSTNCLLVFASRIMNSLGYGQTRQDNYNFMVEVQKCSLDFVYLGLAVMVMAFMEGYC WSKTSERQVLKIRYKYLEAILRQEVGFYDSQEATTSEIINSISNDTSLVQEVLSEKVPIFLMHASVFFSGLAFATYFSWRLSLVAFPTLLLLIIPGMIYG KYLLYLSKKARTEYGKANSIVERALSSIKTIYSFTAEKRIIDRYSAILDRTTKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAA GISFILSGLSLGIALPDLKYFTEASVAATRIFKRIDRVPEIDSEDTKGRVLDKIQGQIVFQNVSFTYPCRPDAVVLKDFNLKVEAGKTVALVGASGSGKS TAIALLQRFYDVDSGIVKIDGVDLRTLNLKWIRGQMGLVSQDHALFGTSIKENIMFGKLDATMDEIMAAAMAANAHNFIRQLPEGYETKVGERGALLSGG QKQRIAIARAIIKNPVILLLDEATSALDSESETLVQNALDQASMGRTTLVVAHKLSTVRNADLIAVVDNGSIIEIGSHNDLINIQNGHYAKLAKLQRQFS CDEQEQNPEIRFSSVTSSAARQSTGKSSPTIFASPLPVDDSPKPVHIPAPSFSRLLSLNAPEWKQGLMGSISAITFGAVQPVYALTVGGMIAALFAPNHD EVRDRIRLYSLIFCSLSLFSIIINLVQHYNFAYMGERLTKRIRLRMLEKILGFETAWFDEEENSSGALCLRLSAEASMVKTLIADRVCLLVQTTSAVTIA MIMGLVVAWKLAIVMIAVQPLTILCFYTKKILLSSISTNFVKAQNRSTQIAVEAVYNHRIVTSFASVGKVLQLFDEAQEEPRKEGRKKSWLAGIGMGSAQ CLTFMSWALDFWFGGTLVEKGEISAGDVFKTFFILVSTGKVIAEAGSMTSDLSKGSTAVASVFKILDRQSLIPGSYHAGDGSSGTKLEKLGGKIEMKKID FAYPSRPETLILRQFCLEVKPGTSVGLVGKSGCGKSTVIGLIQRFYDVEKGSVRVDGVDIRELDIQWFRKRTALVSQEPVLYSGSIRENIMFGKLDASEN EVVEAARAANAHEFISSLKEGYETECGERGVQLSGGQKQRIAIARAILRNPTILLLDEATSALDVQSEQVVQEALDRIMVRRTTIVVAHRLNTIKNLDSI AFVADGKVVERGTYAQLKNKRGAFFDLASLQT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	0	1
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	2.82	0.8832
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.005G030413 [exp]	5.74	0.8633
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385300 [exp]	6.78	0.8654
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	7.87	0.8195
AT4G31980			unknown protein		Potri.003G209000 [exp]	8.06	0.8499
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	8.12	0.8495
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	9.16	0.8560
AT4G18450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.011G061800 [exp]	11.48	0.8144
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.011G144500 [exp]	12.16	0.7899
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	12.32	0.8109

Compare expression of checked genes

Potri.018G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.