Plant FIBer expression Database

Potri.018G087300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40570 681 / 0 initiator tRNA phosphoribosyl transferase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012958
[exp]
488 / 3e-171 AT2G40570 435 / 1e-150 initiator tRNA phosphoribosyl transferase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0031 Phosphatase PF04179 Init_tRNA_PT Rit1 DUSP-like domain
Representative CDS sequence
>Potri.018G087300.1 pacid=42801503 polypeptide=Potri.018G087300.1.p locus=Potri.018G087300 ID=Potri.018G087300.1.v4.1 annot-version=v4.1
ATGGAGAACTACAGAGACGGGAAACTAAGCATATACAGAGCAGCAAGAAGCATAAAACGCAGAGACAACACAGTCTACAACGCATTACAATCAATCCACG
AAGACTCAATATTTGTGGGCGAAATCTCTCAATTATGGCCAGACCTTCCTCTTATAGCCAACCTCCGCTGTGGCCTCTGGTACTCTCCAAAATTCCATTC
TACTTGTTACTTCAAATCCACTGATGGTCACACCAACAATTGGTCCTTCAATACCTCTCGCCTTAATCTCCATGTTGCTCTTCTTTCTGGACAGAAAGGA
GGATGTATTATCGTGGATTCTACTCGCAAAGGGAAGAGGTTTCCTGATAGCATGTCCAAAACAATACCCATTTGGACGTGTGTTTTGAACCGTGCTATTC
TTAATTATAGAAATAAAATGCTTGATTCTGGTTTGCTGATGAATAGGGAGGTGGCGGATTATTCTAATTGTGCTGAAGATGTAAAACTAAAAAATCATAT
CTGGGATTGTTCTTTGCATCTACCACTTTGGGTTCCAGATACAGAGAAAGCGGCAATCGAGGAACGTATAGAAAAATGGACTAACCAGTTGGAAGCAAGT
GGAGCTGATATTGCATGTATTTCTTCCTGCTTGAAAAAGCCTCTACGCCCTTTATGGATATCACAGAAGACTGTAATCTGGTTAAATGAAGTACCTGATC
ATAATCAGTGGGATTTCACTCCTATTATACTTGTTTCTGCTTCTTCTTCAAGTGATGTTTTTCGAAATAAGACTACCTCAGAGTTTAGCTGGAATTATAT
TCCAGGAGCTGGAGACGATGAAGAAAGTTGGGCAAGGGGTTTGACACCCACCCATTTCTGGAGTCATGTGCATGATCTTATTAGTTCAGGACCTGATCTT
TGTAACCAAAAGGTAGCTGATATAGTTGAAAAGGATAGAGTATATCGTGCTCATAGGGGAGAGTATGCTCCTCCAGTTACTGTCAAGAATCTGAAGATGG
CTGATGATGTGGCTGATGTTTCTAATGTAGAACTACCATTAGCTTCAAATATGCATAGTGATGATACTACTTTACAGCCATCTAATGATTATTGTACAAC
ATTTTGGATAGGATCAACCAATCTTGTTGTAGGAACAACTAAACATGCTGCACTTATGTCTAATGTTGATTGCATATTGAACTGTGATAAAGAACCAGTC
TCTATCAATCTTCCAGATTCTGAAGCCCATTTGCATCTTCCTATGGTGAGCTCGAAACTGGATAGGTTTTCCTTGTTCAACAATCTTCCAGCTGCGGTGA
ACTTTGCAAAATTGAACCTTAGAAAAGCACATAGACTTCTAGTTTGTTGCCGTAGTGGTGAAGATATCAGCGTGTGTATTTGTCTAGCTATTTTGACATC
ATTATTCGATGATAAAGGAACTTTTGATGATGGAAGATCTTTCAGCGAAACATGTATTACTAAATTGGAGATGCGGCGTCGACTTGTATTTGTTTGTAAA
TTTGCAATAACTGCTCGACCATCAAGAGGAAATTTGAAACAGGTTTTTGGTTTTCTTACTGGAGGAAGTGCTGCTTCTGCCTGA
AA sequence
>Potri.018G087300.1 pacid=42801503 polypeptide=Potri.018G087300.1.p locus=Potri.018G087300 ID=Potri.018G087300.1.v4.1 annot-version=v4.1
MENYRDGKLSIYRAARSIKRRDNTVYNALQSIHEDSIFVGEISQLWPDLPLIANLRCGLWYSPKFHSTCYFKSTDGHTNNWSFNTSRLNLHVALLSGQKG
GCIIVDSTRKGKRFPDSMSKTIPIWTCVLNRAILNYRNKMLDSGLLMNREVADYSNCAEDVKLKNHIWDCSLHLPLWVPDTEKAAIEERIEKWTNQLEAS
GADIACISSCLKKPLRPLWISQKTVIWLNEVPDHNQWDFTPIILVSASSSSDVFRNKTTSEFSWNYIPGAGDDEESWARGLTPTHFWSHVHDLISSGPDL
CNQKVADIVEKDRVYRAHRGEYAPPVTVKNLKMADDVADVSNVELPLASNMHSDDTTLQPSNDYCTTFWIGSTNLVVGTTKHAALMSNVDCILNCDKEPV
SINLPDSEAHLHLPMVSSKLDRFSLFNNLPAAVNFAKLNLRKAHRLLVCCRSGEDISVCICLAILTSLFDDKGTFDDGRSFSETCITKLEMRRRLVFVCK
FAITARPSRGNLKQVFGFLTGGSAASA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40570 initiator tRNA phosphoribosyl ... Potri.018G087300
[exp]
0 1
AT1G72050 C2H2ZnF TFIIIA transcription factor IIIA (.1.... Potri.019G081100
[exp]
2.44 0.7305
AT3G63440 ATCKX6, CKX6, A... CYTOKININ OXIDASE 6, cytokinin... Potri.001G020900
[exp]
3.31 0.7402
AT1G72990 BGAL17 beta-galactosidase 17 (.1.2) Potri.003G037000
[exp]
6.48 0.7023
AT2G18700 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE... Potri.018G097700
[exp]
10.24 0.7113
AT5G52230 MBD13 methyl-CPG-binding domain prot... Potri.015G140100
[exp]
11.48 0.7308
AT3G26090 ATRGS1, RGS1 REGULATOR OF G-PROTEIN SIGNALI... Potri.008G181500
[exp]
17.66 0.7261
AT5G24750 UDP-Glycosyltransferase superf... Potri.003G021100
[exp]
25.09 0.6865
AT1G17665 unknown protein Potri.003G038600
[exp]
26.03 0.7045
AT5G42870 ATPAH2 phosphatidic acid phosphohydro... Potri.014G031000
[exp]
28.14 0.6731
AT4G31270 Trihelix sequence-specific DNA binding ... Potri.018G002801
[exp]
28.61 0.6163

Potri.018G087300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.