Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) AT3G21600 370 / 7e-127 Senescence/dehydration-associated protein-related (.1.2) AT4G35985 195 / 8e-58 Senescence/dehydration-associated protein-related (.1) AT3G51250 189 / 1e-55 Senescence/dehydration-associated protein-related (.1) AT2G17840 174 / 7e-50 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT3G21590 96 / 7e-23 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164748 [exp] 405 / 4e-141 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 199 / 1e-59 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 193 / 4e-57 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 189 / 2e-55 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011127 [exp] 394 / 3e-136 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 375 / 6e-129 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 319 / 2e-107 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 191 / 3e-56 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10034970 [exp] 185 / 4e-56 AT4G15450 178 / 1e-53 Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 189 / 3e-54 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 171 / 2e-48 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 142 / 4e-38 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 134 / 4e-37 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 124 / 3e-32 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [poplar] [flax] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Potri.018G087500.2 pacid=42801205 polypeptide=Potri.018G087500.2.p locus=Potri.018G087500 ID=Potri.018G087500.2.v4.1 annot-version=v4.1 ATGGGTTGTCTGAGGCCTAAAAGATCCAAAACCACTTCTAACAAGAAAACTACCACACCTGAAGCTGATTTCCTATCACAACAACAAAACCCATCAGGAC CCAAAAATCTCAAACATGAACTTCTTTTGCAAATCCCAGCATGCACAGTTCACCTGATGGAAGCAGGAGAAGCTCTGGAAATTGCCAAGGGAGACTTCAG TCTTGTTAGAATCCTTGACGAGAATATTTCTCTTGCCACCATAGTTAAAATTGGTGATGATCTTCAGTGGCCTTTGACAAAAGATGAGCCAGTGGTTAAG CTTGATGTGTTGCATTATTTGTTCTCTTTGCCAATGAAAGATGGCGACCCTTTGAGCTATGGAGTCGCATTCTTGGATGAGTATGGAAGCAGTTTGGGCT TGCTGGACTCTTTTCTTTGTGAGCTCTCATGCTTTTCTGGGGCGGCAGCTTCTTCAGCTAGAAGTGCTAGAAATGTTGACTGGAAAGAGTTTGCTCCAAA TGTTGAATATTATAACAATTTTTTGGCCAAGGCTATTGCTGGAGGTACTGGTCAGATTGTCAAGGGGATCTTCAAATGTAGCAATTCTTACACTAACCAG GTCCACAAGGGAGGGGAAATGATTTTATCCAGAGCTGCAGAGGAGAAAAATGGTGCCATGGCAACAGAAATTAGCAGCAACAGAAGTGCTGGGTCCACGA AGAAGAGCAAAGTCAACAAAAGCATAAAACGTGTGAGAAAGCTGTCCAGGATGACAGAAAAGCTAAGCAAAACTATGCTTGATGGTGTTGGCATTGCCAC CGGGTCAGTAATTACACCTCTGGTTAAATCTCAAGCTGGAAAGGCATTCCTATCTATGGTCCCAGGAGAAGTACTCTTGGCTTCACTTGATGCTGTCAAT AAGATTCTAGATGCAGCTGAAGTTGCTGAAAGACAAGCTTTATCTGCAACCTCAAAGGCTACAACCAGAATGATCAGTGATAGGTTTGGAGATAGCGCAG GGGAGGCAGCTGAGGATGCGTTTGCAACAGCAGGGCATTGTGTGTGCGCTGCTTGGAATATATTCAAGATACGGAAAGCCATCAATCCAGCAACATCTGT TTCCACAGGAGTGCTTAAGAATGCAGCAAAGAATGCAGCAAGGAATAGAAATAGGAGTTATTAA
AA sequence Show only first row Show all	>Potri.018G087500.2 pacid=42801205 polypeptide=Potri.018G087500.2.p locus=Potri.018G087500 ID=Potri.018G087500.2.v4.1 annot-version=v4.1 MGCLRPKRSKTTSNKKTTTPEADFLSQQQNPSGPKNLKHELLLQIPACTVHLMEAGEALEIAKGDFSLVRILDENISLATIVKIGDDLQWPLTKDEPVVK LDVLHYLFSLPMKDGDPLSYGVAFLDEYGSSLGLLDSFLCELSCFSGAAASSARSARNVDWKEFAPNVEYYNNFLAKAIAGGTGQIVKGIFKCSNSYTNQ VHKGGEMILSRAAEEKNGAMATEISSNRSAGSTKKSKVNKSIKRVRKLSRMTEKLSKTMLDGVGIATGSVITPLVKSQAGKAFLSMVPGEVLLASLDAVN KILDAAEVAERQALSATSKATTRMISDRFGDSAGEAAEDAFATAGHCVCAAWNIFKIRKAINPATSVSTGVLKNAAKNAARNRNRSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15450			Senescence/dehydration-associa...		Potri.018G087500 [exp]	0	1
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	3.00	0.8326
AT2G32280			Protein of unknown function (D...		Potri.007G119600 [exp]	4.58	0.8088
AT3G54000			unknown protein		Potri.010G195800 [exp]	10.67	0.8110
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	16.12	0.8068
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	17.02	0.7666
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	17.29	0.7391
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	18.33	0.7806
AT5G40030			Protein kinase superfamily pro...		Potri.017G075400 [exp]	19.49	0.7523
AT1G10380			Putative membrane lipoprotein ...		Potri.010G158500 [exp]	19.59	0.7838
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	19.62	0.7806	PIN1,PIN1.3

Compare expression of checked genes

Potri.018G087500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.