Plant FIBer expression Database

Potri.018G087700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19880 881 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G164864
[exp]
991 / 0 AT2G19880 855 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034973
[exp]
924 / 0 AT2G19880 886 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Lus10012951
[exp]
869 / 0 AT2G19880 830 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF13506 Glyco_transf_21 Glycosyl transferase family 21
Representative CDS sequence
>Potri.018G087700.1 pacid=42801018 polypeptide=Potri.018G087700.1.p locus=Potri.018G087700 ID=Potri.018G087700.1.v4.1 annot-version=v4.1
ATGTCGGAGGCAATGGATAGTGTCCTCTTCTCTCTGAGTAAAGCATTTTGTAGTCCTCTGGCTGTTTTTGTTCAGATTCAGGGATGTGTAATTTGCTTAA
CTCTTGCTTTTGGGTGGGCTTGTGCTGCTTATGTCAGGAATAGAGAGATCAGACGGATAAAAGATAGTATGAGAGCTGGCAACAGCTTGGCATTTCTTTG
TCAAGATATTAATGAACTTGAGCACTCTTATCAGGCCAATCTGCCTAGAGTTTCAGTGGTTATGCCTTTAAAGGGGTTTGGAGAACATAATCTACACAAT
TGGAGAAGTCAAGTAATATCTCTTTATGGAGGTCCTCTAGAATTCCTTTTTGTTGTGGAAAGTACTGAAGACCCTGCTTACCATGCTGTTTCTCGCTTAA
TATCAGATATCAAGGATAACATTGATGCTAGAGTTGTGGTAGCCGGCTTATCAACGACTTGTAGTCAGAAAATTCACAACCAGTTGATTGGTGTGGAGCA
AATGCACAAAGACAGCAAGTATGTGTTGTTTTTGGATGATGATATTAGGCTGCACCCTGGTTCAATTGGGGCCCTCACTGCTGAGATGGAAAAAAATCCT
GAGATATTTATTCAAACTGGATATCCTCTTGATCTACCTTCTGGGAGCTTAGGAAGTTACTGCATCTATGAATATCACATGCCTTGTTCGATGGGGTTTG
CCACCGGTGGAAAAACATTCTTTCTGTGGGGAGGGTGCATGATGATGCATGCTGATGATTTTAGATATGACTGCTGTGGTGTGGTATCTGGACTTCGAGA
TGGGGGATATTCTGATGACATGACACTTGCAGCTGTAGCGGGTGCTCATAAGAAGCTCATAACATCCCCGCCTGTTGCTGTTTTTCCTCACCCCCTATCC
AGTGATCTCAGCTTTTCAAGGTACTGGAATTACTTGAGGAAGCAAACTTTTGTCTTGGAATCATATATGTTTAAGGTTAACTGGATAATGAACCGTGCAT
TATTTTCTTCGCACTGCTATTTATCATGGGGATTCGTAATGCCATACCTTATGGCCTTGACCCATGTTGCAGCAGCACTGCGAATCTATATCCAAGGATA
TGCTCGTGAGGAAACTACATTTGTTTCTAATGGGTTGTTACTAGTCAGCTGCCTAGCTGCATGCACCTTTATTGAACTTTTCTCAATGTGGAACTTGACA
AGGATAGAAGTTCAACTATGCAACATACTTTCCCCTGAGGCACCCCGACTCTCTCTTGCTACTTATAACTGGGTCCTAGTATTTATTGCAATGCTGGTGG
ATAACTTTTTATATCCAATATCTGCATTCCGTTCCCATTTTTCTCAGTCTATCAATTGGTCTGGTGTCCGGTATTACTTGAAGGATGGAAAGATAAACAA
GATTGAAAGAAGCAAGGATAAGGGCCCTAAATACACAGACTTGGCATGGAAACATTTATATGGGAAGAAGGCAGCTCCTCCCAAACCATCTTTCCTTGGT
GGTTTGCTTAGAAGTTTGGAACAGTGGCAACAACCTAAGAAATTTGATGTTTAG
AA sequence
>Potri.018G087700.1 pacid=42801018 polypeptide=Potri.018G087700.1.p locus=Potri.018G087700 ID=Potri.018G087700.1.v4.1 annot-version=v4.1
MSEAMDSVLFSLSKAFCSPLAVFVQIQGCVICLTLAFGWACAAYVRNREIRRIKDSMRAGNSLAFLCQDINELEHSYQANLPRVSVVMPLKGFGEHNLHN
WRSQVISLYGGPLEFLFVVESTEDPAYHAVSRLISDIKDNIDARVVVAGLSTTCSQKIHNQLIGVEQMHKDSKYVLFLDDDIRLHPGSIGALTAEMEKNP
EIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGGCMMMHADDFRYDCCGVVSGLRDGGYSDDMTLAAVAGAHKKLITSPPVAVFPHPLS
SDLSFSRYWNYLRKQTFVLESYMFKVNWIMNRALFSSHCYLSWGFVMPYLMALTHVAAALRIYIQGYAREETTFVSNGLLLVSCLAACTFIELFSMWNLT
RIEVQLCNILSPEAPRLSLATYNWVLVFIAMLVDNFLYPISAFRSHFSQSINWSGVRYYLKDGKINKIERSKDKGPKYTDLAWKHLYGKKAAPPKPSFLG
GLLRSLEQWQQPKKFDV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19880 Nucleotide-diphospho-sugar tra... Potri.018G087700
[exp]
0 1
AT2G27810 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBA... Potri.009G148600
[exp]
1.00 0.8470
AT4G26690 GDPDL3, GPDL2, ... SHAVEN 3, MUTANT ROOT HAIR 5, ... Potri.001G360800
[exp]
7.74 0.7916
AT1G47380 Protein phosphatase 2C family ... Potri.002G127300
[exp]
7.74 0.7176
AT2G34770 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXY... Potri.001G463800
[exp]
9.16 0.7731 FAH1.2
AT1G57680 unknown protein Potri.003G003500
[exp]
11.74 0.7140
AT1G76160 SKS5 SKU5 similar 5 (.1) Potri.005G247700
[exp]
12.40 0.7389
AT4G35320 unknown protein Potri.004G207500
[exp]
13.30 0.7907
AT1G63850 BTB/POZ domain-containing prot... Potri.001G100900
[exp]
18.97 0.7609
AT4G32410 AtCESA1, RSW1, ... RADIALLY SWOLLEN 1, cellulose ... Potri.018G029400
[exp]
19.89 0.7043 Pt-CESA1.2
AT1G24360 NAD(P)-binding Rossmann-fold s... Potri.008G178700
[exp]
22.97 0.7128

Potri.018G087700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.