Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19870 498 / 2e-170 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT4G38020 54 / 2e-07 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT4G15520 47 / 2e-05 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147600 [exp] 52 / 6e-07 AT4G38020 335 / 5e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011129 [exp] 561 / 0 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10043030 [exp] 553 / 0 AT2G19870 473 / 7e-162 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10025709 [exp] 44 / 0.0003 AT4G38020 337 / 2e-115 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10035953 [exp] 42 / 0.001 AT4G38020 374 / 2e-129 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [poplar] [flax] SPOUT PF00588 [poplar] [flax] SpoU_methylase SpoU rRNA Methylase family CL0101 [poplar] [flax] PELOTA PF08032 [poplar] [flax] SpoU_sub_bind RNA 2'-O ribose methyltransferase substrate binding
Representative CDS sequence Show only first row Show all	>Potri.018G087800.3 pacid=42800794 polypeptide=Potri.018G087800.3.p locus=Potri.018G087800 ID=Potri.018G087800.3.v4.1 annot-version=v4.1 ATGAGCGCAATGTACTCAAATCTAGCAAAGGGCCAATTATTTCCCTTGGCTACCAGGGTTTCTTTAAAACCTAGATGTCTAAAACCCCAGTTTTTACCAA TTGGGTGCCATTCAAAACCCTCACTAAACCCTCTATGTGCCCACTTCACAACACTTTCACATGGTTTTGGCCACAAAGCACATAAAGTTCGCAACTTTGT GAGACCAACAAAAACTAATGCTGAATTTCAGTGGAAGGACATGGAAATGGGAGGGATAGCTAGAGCCAGAAGTATTTCAGGAGGGTTTAGAATTAAAACT GTTGTGCATTGTTCTGCTAGAAGTTTCTCTAGATCGTTTTCGCAGAGAGTCGATGAAGGGAGTGGTGTGGTTAGAGTTGGAAAGTCACTTCCTTGGTTGA ATTCTAAGAAAGTTAAAGAAGCAAAAGGGTTGGAGATTGGGGCAAGTGGAAAGAGTAGTAATTCTTACAGGGGGGAGTCTGTGAAAAGATTGGAGAAAGT TAGTGGTGACTCTTCCTGGGTGAATTCGAGGAAAAGGTTAGAGAAAGGAACTGTTGCAGAAACAGGTTACTCATCTTGGGAGGAGTCTAAGAAAAGGTTA GAAGAAGTGGCTGTCGGAAAAACTGAACGATCTTCTTGGGAGGACATAGCAGAAGCTGCTTCTGGGAGAGAGAATATTCACAAGGTGTGGAATAAAGAAA GTACAAGGAGAATGGTGGGTGCTGCTAAGAACAAGCCAAGTGGTTATGGTTACAATGAAAGGGAAGATGGTGTTGAAGGAGGAGAAGCAGAAGAGGATCT GGAGGTTGTTGATGATCCAAGATGGGATAAGATCAAAAATAGGTTCAGAGGAAGGGTGGGTGTGAGAGGCCAGACTGAGAAACCTGATTTTCAAAGGTGG AATAGGCAGGACAATTGGGGTAGAAAGACATGGAAAGAGGCTACAGAATTTACTGTTCCTAAGATTGTTGGTGAAGGGGTTTTTGGGGTGGGTCCTGTTT TGGCTGCATTATCAACTGGAAGAAGAGAATTCTATGCATTGTATATTCAAGAAGGGTTGGATTTGAGTGGCAATAATAGGAAGAGGAAGGACAAGAAAGG GTTTGAGAAAGTGTTGAGGATGGCTAAGAAAATTGGGTTAAGCACAAAGGAAGTTTCAAAGCATGACCTTAATATGATTGTTGATAATCGCCCCCATCAA GGCCTTGTTCTTGATGCATCTCCATTGGAGATGGTGAAAATACAGGAATTAGATGCAGTTTTACCTGATGAAGAAAAGGGCTCTCTTTGGGTAGCCTTGG ATGAGGTTACAGATCCTCAGAATCTGGGGGCAATTATCAGGTCTGCTTACTTCTTTGGGGCTTCAGGGGTGGTGCTATGTGCAAAAAATTCTGCTCCATT GAGTGGAGTTGTGAGCAAAGCAAGTGCAGGTTCACTTGAACTAATGGAGCTTAGGTATTGCAAAAATATGATGCAATTCTTGGTTTCATCAGCTGAAAAT GGATGGCGAGTTCTTGGTGGTTCTGTTTCTTCAAAAGCTGTTTCTCTGAGTGAGGTTTTGCCTGGTCAACCCACAATCCTTGTTTTGGGCAGTGAGGGCA CTGGTTTGAGGCCATTGGTGGAGAGATCATGTACTCAATTAGTTCGAATCCCTGGAAATATTCCTGTTGATGCAACTGTGGGAGGAGGTGATGAAGTGAA AGATGAAGAAATAAATCTTGAGTGCTCGAGTGCAGAGTTCCGATCCTTTTTGGCCGTGGAGAGCTTGAATGTCAGTGTTGCAGCTGGTGTGCTTCTTCAC CATTTAATTGGAAACAACAATGAGAATCGCAGCATCGGTCATACTTCAACAGTCGTACTGGAATGA
AA sequence Show only first row Show all	>Potri.018G087800.3 pacid=42800794 polypeptide=Potri.018G087800.3.p locus=Potri.018G087800 ID=Potri.018G087800.3.v4.1 annot-version=v4.1 MSAMYSNLAKGQLFPLATRVSLKPRCLKPQFLPIGCHSKPSLNPLCAHFTTLSHGFGHKAHKVRNFVRPTKTNAEFQWKDMEMGGIARARSISGGFRIKT VVHCSARSFSRSFSQRVDEGSGVVRVGKSLPWLNSKKVKEAKGLEIGASGKSSNSYRGESVKRLEKVSGDSSWVNSRKRLEKGTVAETGYSSWEESKKRL EEVAVGKTERSSWEDIAEAASGRENIHKVWNKESTRRMVGAAKNKPSGYGYNEREDGVEGGEAEEDLEVVDDPRWDKIKNRFRGRVGVRGQTEKPDFQRW NRQDNWGRKTWKEATEFTVPKIVGEGVFGVGPVLAALSTGRREFYALYIQEGLDLSGNNRKRKDKKGFEKVLRMAKKIGLSTKEVSKHDLNMIVDNRPHQ GLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVSSAEN GWRVLGGSVSSKAVSLSEVLPGQPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPVDATVGGGDEVKDEEINLECSSAEFRSFLAVESLNVSVAAGVLLH HLIGNNNENRSIGHTSTVVLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19870			tRNA/rRNA methyltransferase (S...		Potri.018G087800 [exp]	0	1
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	5.38	0.9621
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	6.32	0.9620
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	8.71	0.9603
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.002G139400 [exp]	10.67	0.9610
AT4G37510			Ribonuclease III family protei...		Potri.007G053000 [exp]	14.49	0.9603
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	14.69	0.9601
AT3G26630			Tetratricopeptide repeat (TPR)...		Potri.002G220600 [exp]	15.29	0.9565
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	18.73	0.9556
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Potri.014G195600 [exp]	21.02	0.9129
AT5G38290			Peptidyl-tRNA hydrolase family...		Potri.004G098100 [exp]	21.21	0.9491

Compare expression of checked genes

Potri.018G087800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.