Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29120 462 / 2e-164 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 241 / 1e-77 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 232 / 2e-74 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 135 / 5e-37 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 135 / 1e-36 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G20930 104 / 3e-25 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 91 / 9e-20 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT5G41670 55 / 3e-08 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 53 / 2e-07 6-phosphogluconate dehydrogenase family protein (.1) AT3G02360 43 / 0.0002 6-phosphogluconate dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G211500 [exp] 301 / 3e-101 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.014G197900 [exp] 139 / 7e-39 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G040800 [exp] 134 / 3e-36 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.001G465600 [exp] 100 / 1e-23 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 79 / 1e-15 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G038450 [exp] 44 / 3e-05 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.004G108880 [exp] 45 / 5e-05 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 44 / 0.0001 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.003G135600 [exp] 44 / 0.0002 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012950 [exp] 436 / 1e-154 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10001349 [exp] 286 / 2e-95 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 211 / 5e-68 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1) Lus10034977 [exp] 201 / 2e-64 AT4G29120 232 / 2e-77 6-phosphogluconate dehydrogenase family protein (.1) Lus10015455 [exp] 175 / 2e-51 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 139 / 2e-38 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 138 / 6e-36 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 127 / 2e-34 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 105 / 2e-24 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10034975 [exp] 94 / 4e-24 AT4G29120 132 / 1e-39 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01488 [poplar] [flax] Shikimate_DH Shikimate / quinate 5-dehydrogenase CL0106 [poplar] [flax] 6PGD_C PF14833 [poplar] [flax] NAD_binding_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.018G088000.1 pacid=42801982 polypeptide=Potri.018G088000.1.p locus=Potri.018G088000 ID=Potri.018G088000.1.v4.1 annot-version=v4.1 ATGCGACTGTCACTCTTACTTCTTCCACACGCTCTTCCCTGTAACTCTCACAACCTTCCCCTCTCCTCTCTCTCACTACTCCACCGCACCATGGCCGCCG CCGCCACCACCAACGTCGAGCCCATAAGCCCATCAAACACGCGCGTGGGTTGGATCGGAACTGGTGTCATGGGCCGCTCCATGTGCGGCCATCTAATAAA AGCTGGTTACAAAGTCACCGTCTTCAACCGGACCCTTTCAAAGGCCCAACCCTTAATCGACATGGGAGCTCGCCTGGCTCAATCACCTCTCGCTGTCGCT TCCCAATCCGACGTCGTCTTCTCCATCGTCGGCTTTCCCTCCGACGTCCGCAGCGTCCTCCTTGACTCCACTTCCGGCGCCCTCCCAGGACTCCGCCCCG GCGGCGTCCTCGTCGACATGACCACATCTGAACCCTCCCTCGCCGCGGAGATTTCAGCAGCCGCCACTATAAAGGACTGCCACTCCGTTGACGCCCCCGT ATCCGGAGGCGACCGGGGCGCCAAGAACGGTAGCCTCGCAATTTTCGCAGGAGGAGATAAAACAGTCATCGACAGGCTAAGTCCCCTATTTGCCCTCATG GGGAGGGTTAATTACATGGGTGCCACCGGGAAAGGTCAATTCGCAAAATTGGCAAATCAAATAACGATAGCATCAACAATGGTTGGATTAGTAGAGGGAA TTATTTATGCCCATAAAGCTGGATTAAATGTTGAATCTTATTTAAATGCAATCTCAACCGGGGCAGCAGGGTCAAAGTCACTTGATTTATATGGGAGTAG AATTTTAAAGAGGGATTTCGAAGCTGGATTTTATGTCAATCATTTTGTGAAAGATTTAGGGATTTGTTTGAAGGAGTGTCAAAATATGGGACTTGCTTTG CCAGGATTAGCTCTGGCCCAGCAGCTTTATTTGTCTCTTAAGGCTCATGGTGAAGGGAATTTAGGCACTCAAGCTCTTATTTTGGCTCTGGAGAGGCTTA ATAATGTTTCTCTTGAGAATTTGGCTTCTTCCAATTCGGCTGCGAATTAG
AA sequence Show only first row Show all	>Potri.018G088000.1 pacid=42801982 polypeptide=Potri.018G088000.1.p locus=Potri.018G088000 ID=Potri.018G088000.1.v4.1 annot-version=v4.1 MRLSLLLLPHALPCNSHNLPLSSLSLLHRTMAAAATTNVEPISPSNTRVGWIGTGVMGRSMCGHLIKAGYKVTVFNRTLSKAQPLIDMGARLAQSPLAVA SQSDVVFSIVGFPSDVRSVLLDSTSGALPGLRPGGVLVDMTTSEPSLAAEISAAATIKDCHSVDAPVSGGDRGAKNGSLAIFAGGDKTVIDRLSPLFALM GRVNYMGATGKGQFAKLANQITIASTMVGLVEGIIYAHKAGLNVESYLNAISTGAAGSKSLDLYGSRILKRDFEAGFYVNHFVKDLGICLKECQNMGLAL PGLALAQQLYLSLKAHGEGNLGTQALILALERLNNVSLENLASSNSAAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29120			6-phosphogluconate dehydrogena...		Potri.018G088000 [exp]	0	1
					Potri.019G045600 [exp]	3.74	0.9249
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	9.16	0.9233
AT4G32605			Mitochondrial glycoprotein fam...		Potri.008G015600 [exp]	20.12	0.9095
AT1G15710			prephenate dehydrogenase famil...		Potri.001G201100 [exp]	22.24	0.9140
AT1G71730			unknown protein		Potri.005G198100 [exp]	31.30	0.8888
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	31.38	0.9189
AT1G21770			Acyl-CoA N-acyltransferases (N...		Potri.005G178501 [exp]	32.40	0.8876
					Potri.004G038500 [exp]	34.64	0.9137
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Potri.016G070900 [exp]	38.43	0.9164
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	39.47	0.9077

Compare expression of checked genes

Potri.018G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.