Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 739 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 491 / 7e-160 HSL1 HAESA-like 1 (.1) AT5G65710 452 / 2e-145 HSL2 HAESA-like 2 (.1) AT4G28490 451 / 9e-145 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25910 430 / 1e-138 AtRLP52 receptor like protein 52 (.1) AT1G75820 400 / 2e-125 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT1G72180 398 / 1e-124 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 396 / 2e-123 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G08590 395 / 3e-123 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 394 / 4e-123 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088100 [exp] 1457 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 1441 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 1285 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 806 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235800 [exp] 786 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 706 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 482 / 1e-156 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 476 / 6e-154 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 468 / 2e-151 AT1G28440 1309 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034978 [exp] 831 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 790 / 0 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10006028 [exp] 711 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 702 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10018636 [exp] 485 / 2e-157 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 447 / 6e-143 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 444 / 5e-142 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10009476 [exp] 422 / 1e-133 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10007232 [exp] 419 / 1e-132 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 412 / 6e-130 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G088074.1 pacid=42802099 polypeptide=Potri.018G088074.1.p locus=Potri.018G088074 ID=Potri.018G088074.1.v4.1 annot-version=v4.1 ATGTCGGAAATAACCTCCATTGTCCTCTTAATTCACTTCCTCACCCTCTTCCTTCTCCTTCATGCAAACTCCCAATTTCATGATCAAGAACAAGCCGTTC TACTAAGACTGAAACAACACTGGCAAAATCCATTGTCTCTTGAGCAATGGACCCCATCAAACTCCTCTCATTGCACTTGGCCTGGAGTAGTCTGCACCGA TAACTACATCACTCAACTCATCCTTGATAACAAGAACATCTCTGGAACTATCCCACCCTTTCTTTCAGACCTTAAGAACCTCACATTTCTCAACTTTTCT AATAACAATATTATTGGAAAGTTCCCTGTGGCTGTACATAACTTGTCCAAGTTGGAGATCTTAGACCTCTCTCAGAACTATATTGTTGGCACAATTCCTG ATGATATTGACTGTTTGGCTCGCCTCTTGTACCTCAACCTCTGTGTTAATAACTTCACTGGCAGCATTCCAGCTGCCATTGGGCGGATACCAGAGCTAAG AACTCTTTATCTTCATGATAATCTGTTTGATGGTACTTTCCCTCCAGAAATCGGAAACTTGTCCAAACTTGAAGAGTTATATATGGCTCACAATGGCTTT TCTCCATCAAGGTTGCATTCCAGTTTCACCCAGCTGAAGAAACTGAAGATGTTGTGGATTTCCGGAGCGAATTTGATTGGCGAGATTCCACAAATGATTG GAGAAATGGTGGCATTGGAGCACTTGGATTTATCCTCTAATAAACTAACTGGGAATATTCCTGGCAGTTTGTTCATGTTGATGAATTTGAGAGTGCTATG GCTTTACAAGAACAAATTATCTGGGGAAATTCCTCGGGTTGTTGAAGCTTTGAATTTGACTTCCGTCGATCTTTCGGAGAACAATCTGATTGGTACAATA CCTGTTGATTTTGGGAAGCTCGACAAATTATCAGGTTTGAGTTTGTTCTCCAATCAGTTATCTGGTGAGATCCCAGAAGGCATTGGTCGTCTTCCGGCAT TGAAAGATTTTAAGTTGTTTAGCAACAATTTATCAGGGTCAATCCCTCCAGATCTTGGGCGATACTCAGCCCTTGAACGCTTCGAGGTTTGTTCCAATAG GCTTACTGGGAACCTGCCTGAATATTTATGCCATGGAGGGAGCTTAAGAGGCGTGGTAGCTTTTGATAATAAGCTCGGTGGAGAGTTGCCAAAATCACTT GAGAATTGCAGTAGTTTGCTAGCAGTAAGAATCTCAAACAACGCATTTTTTGGCAATATTCCTGTTGGTTTATGGACAGCTTTAAATTTGCAACAACTGA AGATAAGTGATAATTTGTTCACTGGAGAGCTTCCTAATGAAGTGTCAACTAGTCTTTCACGGCTCGAGATAAGTAACAACAAGTTCTCTGGTAGTATTTC CATTGAAGGAAATTCTTGGAGGAATCTGGAGGTCTTCAATGCGAGCAATAACCAATTTACTGGCACCATCCCTCTTGAATTAACTGCTCTTCCTAATATG ACGGTTCTTTTACTTGATAAGAACCAGCTTACCGGAGCACTTCCATCTGACATCATCTCATTGAAATCTTTAACTACTCTAAACCTCAGTCAAAATCAAC TTTCTGGACATATTCCTGAAAAGTTTGGTTTCCTACCTGACCTGGTCAAACTGGACTTATCAGATAATCAATTTTCTGGTAAAATTCCACCACAACTTGG TTCTCTGAAGCTTGTTTTTCTAAATCTCTCTTCCAATAATCTCATGGGGCAAATCCCCACTGAGTTTGAAAATGTTGCTTATGCGACTAGTTTCTTGAAC AATCCTGGTCTTTGTACAAGAAGGTCATCCTTACACCTTAAGGTTTGCAATTCCAGACCTCAAAAATCAAGCAAAACTTCAACCCAATTCCTAGCCTTGA TATTAAGTAGTTTGTTTGCAGCCTTTCTGTTAGCGTTGTTATTTGCATTCATCATGATCAGAGTTCACTGGAAGAGAAACCATAGATTGGATTCAGAATG GAAATTCATCAACTTCCATAAGTTGAATTTTACTGAATCAAACATAGTTTCAGGATTGAAAGAAAGCAACCTGATAGGAAGTGGTGGATCAGGAAAAGTA TATCGTGTTGCTGCAAATGGATTTGGTGATGTAGCTGTGAAAAGAATCTCGAATAACAGAAATTCAGACCAGAAACTTGAGAAGGAGTTCCTTGCGGAAA TTGAGATACTGGGTACCATAAGGCATTTGAATATAGTGAAGTTGCTTTGTTGTATTTCCAATGATAACTCGAAACTTCTTGTTTACGAGTATATGGAGAA GCGTAGTCTTGATCAATGGCTGCATTCAGAGAGAAAGGCAAAAAGTGCATCAGCTTCAGTGAATCATGTTGCTTTGGACTGGTCCAAGAGGCTGCAGATT GCAGTGGGAGCTGCCCAGGGTCTGTGCTAA
AA sequence Show only first row Show all	>Potri.018G088074.1 pacid=42802099 polypeptide=Potri.018G088074.1.p locus=Potri.018G088074 ID=Potri.018G088074.1.v4.1 annot-version=v4.1 MSEITSIVLLIHFLTLFLLLHANSQFHDQEQAVLLRLKQHWQNPLSLEQWTPSNSSHCTWPGVVCTDNYITQLILDNKNISGTIPPFLSDLKNLTFLNFS NNNIIGKFPVAVHNLSKLEILDLSQNYIVGTIPDDIDCLARLLYLNLCVNNFTGSIPAAIGRIPELRTLYLHDNLFDGTFPPEIGNLSKLEELYMAHNGF SPSRLHSSFTQLKKLKMLWISGANLIGEIPQMIGEMVALEHLDLSSNKLTGNIPGSLFMLMNLRVLWLYKNKLSGEIPRVVEALNLTSVDLSENNLIGTI PVDFGKLDKLSGLSLFSNQLSGEIPEGIGRLPALKDFKLFSNNLSGSIPPDLGRYSALERFEVCSNRLTGNLPEYLCHGGSLRGVVAFDNKLGGELPKSL ENCSSLLAVRISNNAFFGNIPVGLWTALNLQQLKISDNLFTGELPNEVSTSLSRLEISNNKFSGSISIEGNSWRNLEVFNASNNQFTGTIPLELTALPNM TVLLLDKNQLTGALPSDIISLKSLTTLNLSQNQLSGHIPEKFGFLPDLVKLDLSDNQFSGKIPPQLGSLKLVFLNLSSNNLMGQIPTEFENVAYATSFLN NPGLCTRRSSLHLKVCNSRPQKSSKTSTQFLALILSSLFAAFLLALLFAFIMIRVHWKRNHRLDSEWKFINFHKLNFTESNIVSGLKESNLIGSGGSGKV YRVAANGFGDVAVKRISNNRNSDQKLEKEFLAEIEILGTIRHLNIVKLLCCISNDNSKLLVYEYMEKRSLDQWLHSERKAKSASASVNHVALDWSKRLQI AVGAAQGLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25930			Protein kinase family protein ...		Potri.018G088074 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Potri.018G088062 [exp]	1.00	0.9833
AT5G25930			Protein kinase family protein ...		Potri.018G088100 [exp]	2.00	0.9170
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	7.93	0.8386
AT4G20930			6-phosphogluconate dehydrogena...		Potri.001G465600 [exp]	8.00	0.8330
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	8.83	0.8174
AT5G59960			unknown protein		Potri.001G237000 [exp]	16.97	0.7882
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.002G071800 [exp]	19.44	0.7446
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.001G174500 [exp]	24.18	0.7676
AT1G51550			Kelch repeat-containing F-box ...		Potri.008G006300 [exp]	28.30	0.7816
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	28.49	0.7949

Compare expression of checked genes

Potri.018G088074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.