Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 885 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 598 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 592 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 557 / 0 HSL2 HAESA-like 2 (.1) AT5G61480 515 / 4e-166 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 514 / 5e-166 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 506 / 5e-163 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 503 / 7e-162 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 501 / 2e-161 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 498 / 3e-160 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088100 [exp] 1474 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 1433 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 1187 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 998 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235800 [exp] 991 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 675 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 603 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 594 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 591 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034978 [exp] 995 / 0 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 964 / 0 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10006028 [exp] 879 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 875 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10013968 [exp] 594 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 590 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 588 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10000814 [exp] 539 / 1e-175 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 537 / 8e-175 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10007232 [exp] 526 / 5e-171 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G088200.1 pacid=42801261 polypeptide=Potri.018G088200.1.p locus=Potri.018G088200 ID=Potri.018G088200.1.v4.1 annot-version=v4.1 ATGTTGAAAATAAACCCCATTATGTTCTCACTTCACTTCCTTGCCCTCTTCCTTTTTTTTCTCGACCATGCAAACCCACAGCTCCATGATCAAGAACAAG CCATTCTACTAAGACTGAAGCAATACTGGCAAAATCCATCTTCTCTCGACCGTTGGACCCCATCAAGCTCCTCTCATTGCACTTGGCCAGGAGTGGCCTG CGCCAATAACTCCATCACTCAGCTCCTTCTTGATAACAAGGACATCACTGGAACAATCCCACCCTTTATTTCTGACCTTAAGAACCTCAAAGTTCTTAAT TTTTCCAATAACAGCATTATTGGAAAGTTCCCTGTAGCTGTCTACAACTTTTCCAAGTTAGAGATCTTAGACCTCTCTCAAAACTACTTTGTTGGCACCA TTCCTGATGATATTGACAGTTTGTCTCGGCTCTCGTACCTCAACCTCTGTGCTAATAACTTCACTGGCAACATTCCAGCTGCCATTGGGCGGATACCAGA GCTAAGAACTCTTTATCTTCATGATAATCTGTTTAATGGTACTTTCCCTGCAGAAATCGGAAACTTGTCCAAACTTGAAGAGTTATATATGTCTCACAAT GGGTTTCTTCCATCAAAGTTGCCTTCCAGTTTCACCCAGCTGAAGAAACTGAGGGAATTGTGGATTTTTGAAGCGAATTTGATTGGCGAGATCCCACAAA TGATTGGGGAAATGGTGGCACTGGAGCACTTGGATTTATCAAAGAATGAATTGACTGGGAGTATCCCAAACGGCTTGTTCATGTTGAAGAATTTGAAGTT TCTGTTTCTTTACAAGAACTTGCTATCTGGGGAGATCCCTCAGGTTGTTGAAGCTTTGAACTCGATTGTCATCGATCTTTCATGGAACAATTTGAATGGG ACAATACCTGTTGATTTTGGGAAGCTTGACAAATTATCAGGTTTGAGTTTGTCCTTCAATCAGTTATCTGGTGAAATCCCAGAAAGCATTGGTCGTCTTC CCGCGTTGAAAGATTTTGCGTTGTTTAGCAACAATTTATCAGGGCCAATCCCGCCAGATCTTGGGCGATACTCAGCCCTTGACGGCTTCCAGGTTGCTTC CAATAGGCTTACAGGGAACCTGCCTGAATATTTATGCCATGGAGGTAGCTTAACAGGAGTGGTAGCTTTTGATAATAAGCTCGGTGGAGAGTTGCCAAAA TCACTTGAGAATTGCAGTAGTTTGCTAACAGTAAGAATCTCAAACAACGCATTTTTTGGTAATATTCCTGTTGGTTTATGGACAGCTTTAAATTTGCAAC AACTGATGATAAATGATAATTTGTTCACTGGAGAGCTTCCTAATGAAGTGTCAACTAGTCTTTCACGGCTCGAGATAAGTAACAACAAGTTCTCTGGTAG TATTTCCATTGAAGGGAATTCTTGGAGGAATCTGGTAGTCTTCAATGCGAGCAATAACCAATTTACTGGCACTATCCCTCTTGAATTAACCGCTCTTCCT AATCTGACGGTTCTTTTACTTGATAAGAACCAGCTTACCGGAGCACTTCCATCTGACATCATCTCATGGAAATCTTTAACTACTCTAAACCTCAGTCAAA ATCAGCTCTCTGGACAGATTCCAGAGGAGATTGCTATCCTACCTCACCTGCTCGAACTGGACTTGTCAGATAATCAATTTTCTGGCCAAATTCCACCTCA ACTCGGTTTGCTGAGACTTACGTATCTCAATCTCTCTTCAAATCATCTCGTGGGAAAAATCCCAGCTGAGTATGAAAATGCAGCATATTCCAGTAGCTTC TTGAACAATCCTGGTATTTGTGCAAGTAGGCCATCGCTATACCTTAAGGTTTGCATTTCCAGACCCCAAAAATCAAGCAAAACTTCAACCCAACTCCTAG CCTTGATATTAAGTGTTTTGATTACAGCTTTTCTGTTAGCATTGTTATTTGCATTCATCATTATCAGAGTTCACTGGAAGAGAAACCATAGATCGGATTC AGAATGGAAGTTCATTAACTTCCATAGGTTGAATTTTACTGAATCAAACATACTGTCAGGATTGACAGAAAGCAACCTGATAGGAAGCGGTGGATCAGGA AAAGTATATCGTGTTGCTGCAAATGGCTCGAGTGTTGTTGCTGTGAAAAGAATCTGGAATAACAGACCGTTGGAGAAGAAACTTGAAAAGGAGTTCCTTG CAGAAGTTGAGATACTGAGTACAATAAGGCATTTGAACATAGTGAAGTTGCTCTGTTGTATTGTCAATGACAATTCGAAACTTCTTGTCTACGAGTATCT GGTGAATCATAGTCTCGATCAATGGCTGCATACAGCAAGGCGATCAAACAGTGCATCAACTTCAGTAAATCATGTTGTTCTGGACTGGCCGAAGAGACTG CAGATAGCAGTGGGAGCTGCTCAGGGTCTGTGCTACCTGCATCACGACTGCTCTCCCCCAATAGTTCACCGAGATGTCAAGTCAAGCAATATCTTGTTGG ATTCTGAGTTTAATGCAAAAATTGCTGATTTTGGTTTAGCAAAGATGCTGATTAAGCAGGAAGAACTTGCCACCGTGTCAGCTGTTGCCGGTTCTTTTGG TTACATAGCTCCAGAGTATGCTCAAACAGTTAGAGTAAATGAGAAGACCGATGTTTATAGCTTTGGGGTTGTCCTTCTAGAACTAACAACGGGAAAAGCA GCAAATTATGGTGATGAGCATACAGGCCTCGCCAAATGGGCATTGCGTCACATGCAAGAAGGAAAAACTATAGTCGATGCCTTAGATGACGAGATAAAGG AACCTTGTTACGTGGATGAAATGAGCAATGTTTTCCTATTGGGGGTTTTCTGTACCAGCGAAGTGCCTTCTGCTAGGCCTCACATGAAGGAGGTTTTGCA AATCTTACTCGGAAGGAACCATCCATTGGTCTACGGAGTGAAGAACATTGGAAGTGAGTATGATTCCACTCCTTTGCTTAAGAACTCAAAACGCGAGGGG CAATCAGAAAGTGACAGCACTTTGGCATCCGATAATTGA
AA sequence Show only first row Show all	>Potri.018G088200.1 pacid=42801261 polypeptide=Potri.018G088200.1.p locus=Potri.018G088200 ID=Potri.018G088200.1.v4.1 annot-version=v4.1 MLKINPIMFSLHFLALFLFFLDHANPQLHDQEQAILLRLKQYWQNPSSLDRWTPSSSSHCTWPGVACANNSITQLLLDNKDITGTIPPFISDLKNLKVLN FSNNSIIGKFPVAVYNFSKLEILDLSQNYFVGTIPDDIDSLSRLSYLNLCANNFTGNIPAAIGRIPELRTLYLHDNLFNGTFPAEIGNLSKLEELYMSHN GFLPSKLPSSFTQLKKLRELWIFEANLIGEIPQMIGEMVALEHLDLSKNELTGSIPNGLFMLKNLKFLFLYKNLLSGEIPQVVEALNSIVIDLSWNNLNG TIPVDFGKLDKLSGLSLSFNQLSGEIPESIGRLPALKDFALFSNNLSGPIPPDLGRYSALDGFQVASNRLTGNLPEYLCHGGSLTGVVAFDNKLGGELPK SLENCSSLLTVRISNNAFFGNIPVGLWTALNLQQLMINDNLFTGELPNEVSTSLSRLEISNNKFSGSISIEGNSWRNLVVFNASNNQFTGTIPLELTALP NLTVLLLDKNQLTGALPSDIISWKSLTTLNLSQNQLSGQIPEEIAILPHLLELDLSDNQFSGQIPPQLGLLRLTYLNLSSNHLVGKIPAEYENAAYSSSF LNNPGICASRPSLYLKVCISRPQKSSKTSTQLLALILSVLITAFLLALLFAFIIIRVHWKRNHRSDSEWKFINFHRLNFTESNILSGLTESNLIGSGGSG KVYRVAANGSSVVAVKRIWNNRPLEKKLEKEFLAEVEILSTIRHLNIVKLLCCIVNDNSKLLVYEYLVNHSLDQWLHTARRSNSASTSVNHVVLDWPKRL QIAVGAAQGLCYLHHDCSPPIVHRDVKSSNILLDSEFNAKIADFGLAKMLIKQEELATVSAVAGSFGYIAPEYAQTVRVNEKTDVYSFGVVLLELTTGKA ANYGDEHTGLAKWALRHMQEGKTIVDALDDEIKEPCYVDEMSNVFLLGVFCTSEVPSARPHMKEVLQILLGRNHPLVYGVKNIGSEYDSTPLLKNSKREG QSESDSTLASDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117981 [exp]	1.41	0.9415
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	5.29	0.9182
AT3G47570			Leucine-rich repeat protein ki...		Potri.013G133100 [exp]	5.29	0.8809
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	10.19	0.9095	Pt-IFS1.42
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027501 [exp]	10.67	0.9125
AT2G46600			Calcium-binding EF-hand family...		Potri.014G101700 [exp]	15.00	0.9021
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G117175 [exp]	15.36	0.8534
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.007G066300 [exp]	17.88	0.8959
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	19.79	0.9028
AT1G25390			Protein kinase superfamily pro...		Potri.010G121025 [exp]	23.81	0.9030

Compare expression of checked genes

Potri.018G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.