Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HXK1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29130 743 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 726 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 467 / 2e-161 ATHKL1, HKL1 hexokinase-like 1 (.1) AT1G47840 444 / 1e-152 HXK3 hexokinase 3 (.1) AT3G20040 429 / 9e-147 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT4G37840 350 / 1e-115 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190400 [exp] 701 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 509 / 9e-178 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.005G238600 [exp] 502 / 3e-175 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.009G050000 [exp] 485 / 2e-168 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 439 / 1e-150 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038287 [exp] 692 / 0 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10037588 [exp] 683 / 0 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 650 / 0 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10012946 [exp] 648 / 0 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10025815 [exp] 550 / 0 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 493 / 1e-171 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 493 / 1e-171 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10005019 [exp] 476 / 7e-165 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 463 / 6e-160 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10034980 [exp] 336 / 7e-112 AT2G19860 334 / 6e-113 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00349 [poplar] [flax] Hexokinase_1 Hexokinase CL0108 [poplar] [flax] Actin_ATPase PF03727 [poplar] [flax] Hexokinase_2 Hexokinase
Representative CDS sequence Show only first row Show all	>Potri.018G088300.1 pacid=42801579 polypeptide=Potri.018G088300.1.p locus=Potri.018G088300 ID=Potri.018G088300.1.v4.1 annot-version=v4.1 ATGGGGAAGGTGGCAGTAGGAGCGGCGGTTGTTTGCGCGGCGACAGTGTGTGCGGCGGCGGCGTTGGTGGTGAGGCACAGGATGAGATGTTCAGGGAGGT GGGCCAGGGCTATGGCGATACTAAGAGAGTTTGAGGAAAATTGTGGGACCCCTATTGGGAAGTTAAGACAGGTGGCTGATGCTATGACCGTTGAGATGCA TGCCGGCCTTGCATCTGAGGGTGGTAGTAAGCTCAAGATGTTAATCAGCTATGTAGATAATCTTCCCTCCGGAGAAGAGAATGGGTTGTTCTATGCATTG GACCTTGGCGGAACAAATTTTCGAGTTATACGGGTACTGCTCGGTGGGAGGGATGGAGGTGTTGTCAAACAAGAGTTTGAGGAAGTTTCAATTCCTCCAC ACTTGATGACTGGATCTTCAGATGCACTATTTGGTTTCATTGCTACAGCGCTTGCCAATTTTGTTGCCACAGAAAGTGAAGGTCTGCATTGTTCACCTGG GAGACAAAGGGAGCTCGGTTTTACCTTCTCATTTCCAGTTAGGCAAACATCAATAGCATCTGGAAATCTTATAAAATGGACAAAAGGATTCTCCATAGAT GATGTGGTTGGAGAAGATGTGGTGGGAGAATTAACCAAAGCCATGGAAAGAATTGGACTTGACATGCGCGTGTCAGCTTTGGTCAATGATACAATTGGAA CATTAGCTGGAGGTCGATACCACAACCCAGATGTAATTGCTGCTGTAATATTGGGTACTGGAACAAATGCAGCATATGTAGAGCGAGCACAAGCAATTCC TAAGTGGCATGGTCTTCTACCCAAATCTGGAGAAATGGTTATCAACATGGAATGGGGTAATTTCCGGTCTTCGCACCTTCCACTAACAGAATATGATCAA GACTTGGATGTTGAGTCTTTGAATCCTGGCGAACAGATTTTTGAAAAGATTATTTCTGGTATGTATTTGGGAGAAATTGTACGCAGAGTTCTACTGAAAA TGGCTGAAGAGGCTGCCTTTTTTGGTGATATTGTTCCACAAAAACTGAAGATTCCATTCATCTTAAGGACGCCTCACATGTCTGCAATGCACCATGATGA ATCTTCAGATCTGAGAGTTGTTGGAAGCAAACTAAAAGATATTTTAGAGATACCTCATACCTCGCTGAAAATGAGGAAAGCTATTGTTGAACTATGTGAC ATTGTTGCCACTCGTGGTGCCCGCCTATCTGCTGCTGGGATTGTAGGCATCATCAAGAAATTGGGTAGAGACACTGTAAAGGATGGTGAAAAGCAGAAGT CTGTGATAGCAATGGATGGTGGGTTGTATGAGCACTACTCTAAATTTAGTACCTGCATGGAAAGCACTCTCAAGGAGTTACTGGGAGAAGAAGTTTCTGA CAACATTGTCGTTGAGCAGTCTAATGATGGCTCAGGCATTGGAGCTGCTCTCCTAGCAGCCTCGCATTCCCAATACCTGGAGGTCGAAGAATCTTGA
AA sequence Show only first row Show all	>Potri.018G088300.1 pacid=42801579 polypeptide=Potri.018G088300.1.p locus=Potri.018G088300 ID=Potri.018G088300.1.v4.1 annot-version=v4.1 MGKVAVGAAVVCAATVCAAAALVVRHRMRCSGRWARAMAILREFEENCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPSGEENGLFYAL DLGGTNFRVIRVLLGGRDGGVVKQEFEEVSIPPHLMTGSSDALFGFIATALANFVATESEGLHCSPGRQRELGFTFSFPVRQTSIASGNLIKWTKGFSID DVVGEDVVGELTKAMERIGLDMRVSALVNDTIGTLAGGRYHNPDVIAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDQ DLDVESLNPGEQIFEKIISGMYLGEIVRRVLLKMAEEAAFFGDIVPQKLKIPFILRTPHMSAMHHDESSDLRVVGSKLKDILEIPHTSLKMRKAIVELCD IVATRGARLSAAGIVGIIKKLGRDTVKDGEKQKSVIAMDGGLYEHYSKFSTCMESTLKELLGEEVSDNIVVEQSNDGSGIGAALLAASHSQYLEVEES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.018G088300 [exp]	0	1	HXK1.1
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	2.64	0.8924	AATP1.1,PtrAATP1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017600 [exp]	5.29	0.8598
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.004G201400 [exp]	8.71	0.8624	Pt-NLP1.2
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	10.95	0.8740	Pt-LACS6.1
AT2G31820			Ankyrin repeat family protein ...		Potri.017G006800 [exp]	11.22	0.8423
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	21.63	0.8575
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017666 [exp]	25.45	0.8291
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	26.00	0.8502
AT5G47040		LON2	lon protease 2 (.1)		Potri.003G086000 [exp]	28.98	0.8356	LON.2
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.008G022000 [exp]	32.86	0.8588

Compare expression of checked genes

Potri.018G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.