Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57300 470 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G23360 93 / 4e-22 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G69520 47 / 4e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G20330 45 / 4e-05 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT3G63410 40 / 0.0008 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G188600 [exp] 102 / 2e-25 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011441 [exp] 512 / 0 AT5G57300 475 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037553 [exp] 384 / 2e-135 AT5G57300 359 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000179 [exp] 362 / 1e-127 AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 109 / 3e-28 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 71 / 5e-14 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011439 [exp] 49 / 2e-06 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014711 [exp] 45 / 5e-05 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 43 / 0.0002 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023995 [exp] 42 / 0.0004 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.018G088400.2 pacid=42801857 polypeptide=Potri.018G088400.2.p locus=Potri.018G088400 ID=Potri.018G088400.2.v4.1 annot-version=v4.1 ATGGCGCTGAAATTGGTTAGCAGGAAGCTGGGGAGCAAATTCTTGCCCATGCTGTCTTCCACTTCTCCACTGCATTCACATGCCACTAGCTTTGGATTCA AACATGTTCGAGAAGAAGAAAAAAGTCAAATGGTTGGTAATGTTTTCAGCAGTGTGGCCTCAAATTATGATCTCATGAATGATTTAATGAGTGGTGGATT ACATAGGTTATGGAAGGACAGACTGGTTTCTATGCTGAATCCATTTCCTGGAATGAAGCATCTTGATGTGGCTGGTGGAACAGGAGATGTTGCTTTCAAG ATTCTGGATGGCATAAGTAGTATCAAGCGTAGAGCAAATCAAGATCCCATTAATGATCATTTACAGGAAGAAACACAGATACATGTGTGTGACATAAACC CAAACATGTTAAATGTTGGCAAAAAACGGGCTATAGAGAGGGGTCTTGGAGAAGACAAATCACTCATATGGGTGGAGGGAGATGCTGAAGCCTTAAGTTT TGAAGATAATACCATGGATGGCTACACAATAGCATTTGGAATTAGGAATGTTACACACATAGAGAAAGTTCTTGCTGAAGCGTATAGGGTATTAAAACAC GGAGGAAGATTTCTTTGCCTTGAACTGAGCCACGTTGAAGTTCCTGTGTTTAAAGAATTATATGATTACTATTCATTCTCAGTCATTCCAGCTGTGGGAG AGCTAGTTGCAGGTGATCGGGATTCTTATCAGTACTTGGTTGAGAGCATACGTCGTTTTCCTCCACAGGTGAAATTTGCTTCGATGATTGCAGATGCAGG ATTTCAGAAGGTTGAGTATGAGAATCTCGTTGGGGGAGTTGTAGCCATTCATTCAGGTTTAAAAATATGA
AA sequence Show only first row Show all	>Potri.018G088400.2 pacid=42801857 polypeptide=Potri.018G088400.2.p locus=Potri.018G088400 ID=Potri.018G088400.2.v4.1 annot-version=v4.1 MALKLVSRKLGSKFLPMLSSTSPLHSHATSFGFKHVREEEKSQMVGNVFSSVASNYDLMNDLMSGGLHRLWKDRLVSMLNPFPGMKHLDVAGGTGDVAFK ILDGISSIKRRANQDPINDHLQEETQIHVCDINPNMLNVGKKRAIERGLGEDKSLIWVEGDAEALSFEDNTMDGYTIAFGIRNVTHIEKVLAEAYRVLKH GGRFLCLELSHVEVPVFKELYDYYSFSVIPAVGELVAGDRDSYQYLVESIRRFPPQVKFASMIADAGFQKVEYENLVGGVVAIHSGLKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57300			S-adenosyl-L-methionine-depend...		Potri.018G088400 [exp]	0	1
AT1G67680			SRP72 RNA-binding domain (.1)		Potri.006G216400 [exp]	2.44	0.9279
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.017G113601 [exp]	2.44	0.9288
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.004G143100 [exp]	3.31	0.9093
AT1G09270		IMPA-4	importin alpha isoform 4 (.1.2...		Potri.013G007300 [exp]	4.00	0.9126
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	7.34	0.9138
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.001G019400 [exp]	11.83	0.9133
AT2G03430			Ankyrin repeat family protein ...		Potri.010G161300 [exp]	12.64	0.8853
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.006G072100 [exp]	13.56	0.8930
AT3G27080		TOM20-3	translocase of outer membrane ...		Potri.003G173400 [exp]	14.66	0.9193	Pt-TOM20.2
AT3G21280		UBP7	ubiquitin-specific protease 7 ...		Potri.003G033700 [exp]	16.24	0.8216	UBP6.1

Compare expression of checked genes

Potri.018G088400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.