Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VLN4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30160 1464 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 1342 / 0 VLN5 villin 5, villin, putative (.1) AT2G41740 807 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 800 / 0 ATVLN3, VLN3 villin 3 (.1) AT2G29890 783 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165300 [exp] 1738 / 0 AT4G30160 1507 / 0.0 villin 4 (.1.2) Potri.009G045000 [exp] 853 / 0 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3) Potri.006G050200 [exp] 826 / 0 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 825 / 0 AT2G41740 1248 / 0.0 villin 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015333 [exp] 1403 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10025461 [exp] 972 / 0 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10005861 [exp] 816 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10035450 [exp] 810 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10031066 [exp] 758 / 0 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10015334 [exp] 136 / 2e-37 AT4G30160 132 / 3e-37 villin 4 (.1.2) Lus10015332 [exp] 96 / 3e-23 AT4G30160 100 / 4e-26 villin 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF02209 [poplar] [flax] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Potri.018G089700.4 pacid=42801046 polypeptide=Potri.018G089700.4.p locus=Potri.018G089700 ID=Potri.018G089700.4.v4.1 annot-version=v4.1 ATGGCTGTTTCCATGAGAGATTTAGACTCGGCCTTTCAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGGATTGAAAACTTTCGTCCTGTTCCTG TGCCGAAGTCCTCTCATGGAAAATTTTTTACCGGGGACTCCTATGTAATTTTACAGACAACTGCACTAAAAAGTGGTTCCTTACGTCATGATATTCATTA TTGGCTAGGTAAAGATACCTCTCAGGATGAAGCAGGTGCTGCTGCCATTAAAACAGTTGAACTAGATGCTGCTCTTGGAGGCCGTGCTGTGCAGTATCGT GAAGTGCAGGGACATGAAACTGAGAAGTTCTTATCTTATTTTAAACCATGTATTATACCTCAAGAAGGTGGAGTCGCATCTGGATTCAAACAAGCTGAGG CCATGGAACACCAGACACACTTGTTTGTTTGTAGAGGAAAACACGTTGTCCATGTGAACGAGGTTCCTTTTGCTCGATCCTCACTCAACCACGATGATAT TTTTATTCTTGATACAAAGTCAAAAATTTTTCAATTTAATGGCTCCAACTCATCCATTCAAGAGAGAGCTAAAGCTTTAGAGGTGGTTCAGTACATCAAA GATACTTATCATGATGGAAAATGTGAGGTGGCTGCTGTTGAGGATGGAAAATTGATGGCTGATGCTGAAACTGGAGAGTTCTGGGGTTTCTTTGGTGGCT TTGCTCCACTTCCAAGGAAAACAACTAGTGATGAGGATAAGACTGATGTTTCTTTTCCTACTAAGCTGTTTCATGTTGAGAAGGGACAGGCAGAACCTGT TGAAGCTGATTCTTTGACAAGGGAGTTGCTGGACACCAATAAGTGTTACATTCTAGATTGTGGAATTGAAGTCTTTGTATGGATGGGGAGAAATACTTCT CTTGACGAAAGGAAAAGTGCCAGCGGAGCAGCGGAAGAGTTAGTCCGTGCTGCTGAACGTCCAAATTCCCGCATTGCTCGTGTAATTGAGGGGTTTGAGA CGGTGATGTTTAGATCAAAATTTGAATCGTGGCCTCAGACAACTAACGTGACTGTGTCTGAGGATGGTAGAGGAAAAGTTGCAGCACTTCTAAGACGCCA GGGGGTTAATGTCAATGGTCTGTTGAAAACTGCTCCTGTGAAAGAAGAACCTCAACCATACATTGATGTCACTGGGAATTTGCAGGTTTGGAGTGTGAAT GACCAGGAAAAGATTCTCATTCCTGCTGCAAATCAGTCAAAATTTTACAGTGGAGGTTGCTATATTTTTCAGTATTCATATCCAGGAGAAGACAGGGAAG AATATCTTATAGGAACATGGTTTGGGAAGAAGAGTGTTGAGGAGGAAAGAGCTTCTGCTATTTCATTGGCGAGCAAGATGGTTGAATCATTAAAGTTTCT ACCTGCCCAGGCTCGCATCTTTGAAGGAAATGAGCCTATCCAGTTCTTTTCAATCTTCCAGAGCTTTATTGTATTTAAGGGTGGTCATAGCTCTGGTTAC AAGAAATATATTGCTGAAAATGAACTCCCAGATGAGACATGCAAGGAGGATGGTGTTGCGTTATTCAGGGTTCAGGGTTCTGGACCTGATAATATGCAGG CTATACAAGTTGAGCCAGTTGCATCATCACTGAATTCCTCCTACTGTTACATATTACATAATGATTCCTCTGTTTTTACGTGGTCTGGAAACCTTACTAC TTCAGAGGACCAGGAACTTATTGAAAGGCAGCTGGATTTGATAAAGCCAAATATGCAGTCTAAGCCACAAAAGGAAGGTTCAGAATCTGAACAATTTTGG GATTTGTTAGGAGGTAAATCTGAATATCCCAGTCAAAAACTTGCAAGGGAAGCTGAAAGTGATCCGCACCTATTCTCTTGCATATTTTTGAAAGGAAACC TGAAGGTTTCTGAGATATACAACTTCACCCAGGATGATTTAATGACTGAAGATATTTTTATCTTGGATACTCACTCTGAGATCTTTGTCTGGGTGGGGCA ACAGGTTGACTCCAAAAGCAAACTGCAAGCCTTGAGTATTGGAGAGAAATTTCTTGAGCATGATTTTCTGTTAAAGAAGTCATCCGGTGAAACTCCAATA TATATTGTTATGGAAGGGAGTGAGCCACCTTTCTTCACACGCTTCTTCACATGGGATTCTGCAAAATCTTCAATGCATGGAAACTCATTCCAAAGGAAAC TTGCAATTGTAAAAAATGGGGGTACTCCACTTCTAGATAAACCCAAACGTAGAACAGCCGTATCTTATGGAGGCAGATCTAGTGTACCTGACAAATCACA GCGTTCCAGAAGCATGTCTTTCAGTCCTGACAGAGTTCGAGTTAGGGGAAGGTCTCCAGCTTTCAATGCCCTGGCTGCTAATTTTGAGAACCCTAATGCC AGAAACCTTTCAACTCCACCACCAGTTGTAAGAAAGGTATATCCAAAGTCTGTGAGCCCTGATTCAGCAAAACTGGCTTCCAAATCTGCAGCTATAGCAG CATTGACTGCAAGTTTTGAACAACCGCCACCAGCACGACAAGTAATTATGCCGCGGTCTGTCAAGGTGAGCCCTGAGACTCCAAAATCGACACCTGAGTC AAACTCTAAGGAGAAGCCTATAAGCATCAGAATAGAATCCCTGACCATACAGGAGGATGTGAAAGAGGGTGAAGCTGAAGATGAGGAAGGGCTCCCAATT TATCCATATGAAGGCCTTAAAGTTAACTCGCCAGATCCTGTAACTGAAATTGATGTGACCAAGCGAGAGACTTACCTCTCAGCAGCAGAATTTAGGGAGA AATTTGGGATGGCAAAGGATGCTTTCTATAAGTTGCCCAAATGGAAACAGAACAAGCTCAAAATGGCCCTTCAATTGTTCTGA
AA sequence Show only first row Show all	>Potri.018G089700.4 pacid=42801046 polypeptide=Potri.018G089700.4.p locus=Potri.018G089700 ID=Potri.018G089700.4.v4.1 annot-version=v4.1 MAVSMRDLDSAFQGAGQKAGLEIWRIENFRPVPVPKSSHGKFFTGDSYVILQTTALKSGSLRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYR EVQGHETEKFLSYFKPCIIPQEGGVASGFKQAEAMEHQTHLFVCRGKHVVHVNEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIK DTYHDGKCEVAAVEDGKLMADAETGEFWGFFGGFAPLPRKTTSDEDKTDVSFPTKLFHVEKGQAEPVEADSLTRELLDTNKCYILDCGIEVFVWMGRNTS LDERKSASGAAEELVRAAERPNSRIARVIEGFETVMFRSKFESWPQTTNVTVSEDGRGKVAALLRRQGVNVNGLLKTAPVKEEPQPYIDVTGNLQVWSVN DQEKILIPAANQSKFYSGGCYIFQYSYPGEDREEYLIGTWFGKKSVEEERASAISLASKMVESLKFLPAQARIFEGNEPIQFFSIFQSFIVFKGGHSSGY KKYIAENELPDETCKEDGVALFRVQGSGPDNMQAIQVEPVASSLNSSYCYILHNDSSVFTWSGNLTTSEDQELIERQLDLIKPNMQSKPQKEGSESEQFW DLLGGKSEYPSQKLAREAESDPHLFSCIFLKGNLKVSEIYNFTQDDLMTEDIFILDTHSEIFVWVGQQVDSKSKLQALSIGEKFLEHDFLLKKSSGETPI YIVMEGSEPPFFTRFFTWDSAKSSMHGNSFQRKLAIVKNGGTPLLDKPKRRTAVSYGGRSSVPDKSQRSRSMSFSPDRVRVRGRSPAFNALAANFENPNA RNLSTPPPVVRKVYPKSVSPDSAKLASKSAAIAALTASFEQPPPARQVIMPRSVKVSPETPKSTPESNSKEKPISIRIESLTIQEDVKEGEAEDEEGLPI YPYEGLKVNSPDPVTEIDVTKRETYLSAAEFREKFGMAKDAFYKLPKWKQNKLKMALQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	0	1	Pt-VLN4.2
AT1G60070			Adaptor protein complex AP-1, ...		Potri.016G104700 [exp]	1.00	0.9549
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	3.87	0.9472
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.002G197200 [exp]	4.00	0.9395
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	4.24	0.9519
AT4G23460			Adaptin family protein (.1)		Potri.003G130400 [exp]	6.70	0.9517
AT3G44330			unknown protein		Potri.004G198200 [exp]	6.70	0.9394
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.014G122200 [exp]	8.06	0.9348
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	9.48	0.9320
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.010G044700 [exp]	9.79	0.9484
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	10.00	0.9310	Pt-CLF.1

Compare expression of checked genes

Potri.018G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.