Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30170 472 / 6e-169 Peroxidase family protein (.1) AT2G18980 461 / 2e-164 Peroxidase superfamily protein (.1) AT4G37530 417 / 7e-147 Peroxidase superfamily protein (.1.2) AT4G37520 407 / 3e-143 Peroxidase superfamily protein (.1.2) AT3G49960 407 / 5e-143 Peroxidase superfamily protein (.1) AT5G67400 405 / 1e-142 RHS19 root hair specific 19 (.1) AT5G14130 333 / 6e-114 Peroxidase superfamily protein (.1) AT1G05260 249 / 6e-81 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G17690 248 / 1e-80 Peroxidase superfamily protein (.1) AT5G47000 247 / 4e-80 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053400 [exp] 423 / 2e-149 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.001G329200 [exp] 391 / 8e-137 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.017G064100 [exp] 390 / 1e-136 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.007G074700 [exp] 285 / 4e-95 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 261 / 1e-85 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 248 / 1e-80 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.002G018000 [exp] 246 / 8e-80 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 244 / 3e-79 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 244 / 6e-79 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001442 [exp] 486 / 3e-174 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10011079 [exp] 426 / 4e-150 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10032035 [exp] 353 / 1e-121 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10012540 [exp] 349 / 3e-120 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10001622 [exp] 332 / 2e-113 AT2G18980 320 / 4e-109 Peroxidase superfamily protein (.1) Lus10035204 [exp] 256 / 2e-84 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10013955 [exp] 255 / 4e-82 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10017288 [exp] 250 / 2e-81 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10005614 [exp] 248 / 9e-81 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10042144 [exp] 246 / 1e-79 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.018G089900.1 pacid=42801304 polypeptide=Potri.018G089900.1.p locus=Potri.018G089900 ID=Potri.018G089900.1.v4.1 annot-version=v4.1 ATGGGAAATCAAAGATTCATTGTTCTATCAATACTTCTGTCTCTACTAATCACAATTGCTTCTGCTCAGTCGTCTCAACTTAGACAAAACTTTTACCAGA ACATTTGTCCTAATGTAGAATCACTCGTCCGTTCTGCAGTCCAGACGAAGTTTAGCCAGACCTTTGTGACTGCCCCGGCAACTCTTCGACTCCTCTTCCA CGATTGCTTTGTCCGGGGATGTGATGCTTCGGTGCTGCTTTCGTCACCTTCTAACAATGCAGAGAAGGACCACCCTGATGATATTTCGCTTGCCGGTGAT GGATTTGACACTGTGATCAAAGCCAAGGCAGCTGTTGATAGCAATCCTCGATGCAGAAACAAAGTTTCATGTGCTGATATACTAGCTCTTGCGACTAGAG ATGTTGTAGTCTTGGCAGGGGGGCCATCTTATTCAGTTGAATTAGGAAGACGTGATGGGAGGATATCTACAAAAGGCAGTGTTCAACGCAAACTCCCTCA TCCTACTTTCAACTTGGACCAGCTGAATTCAATGTTTGCTTCCCATGGTCTCTCCCAGACTGATATGATTGCTTTGTCAGGTGCCCATACACTTGGATTC TCTCATTGTAGCCGCTTTGCCGACAGGATTTACAGATTCAATTCTCGAAACAGGATTGACCCAACTCTAAATCTGCAATATGCTATGCAGCTTAGACAAA TGTGCCCTGTTAATGTTGACTCAAGAATTGCCATTAACATGGACCCGACCACACCCCGGCAGTTTGACAATGCCTACTACCAAAACCTTAAGAATGGAAA GGGCTTGTTCACCTCTGATCAGATACTGTTTACCGATTCAAGATCGAAGGGCACTGTCAACCTATTTGCATCGAACAATGCTGCCTTCCAACAAGCATTT GTGACTGCTATCACTAAGCTAGGCCGAGTTGGGGTTTTGACTGGTAATCAAGGTGAAATTCGGCGAGACTGTTCCCGAATAAACTAA
AA sequence Show only first row Show all	>Potri.018G089900.1 pacid=42801304 polypeptide=Potri.018G089900.1.p locus=Potri.018G089900 ID=Potri.018G089900.1.v4.1 annot-version=v4.1 MGNQRFIVLSILLSLLITIASAQSSQLRQNFYQNICPNVESLVRSAVQTKFSQTFVTAPATLRLLFHDCFVRGCDASVLLSSPSNNAEKDHPDDISLAGD GFDTVIKAKAAVDSNPRCRNKVSCADILALATRDVVVLAGGPSYSVELGRRDGRISTKGSVQRKLPHPTFNLDQLNSMFASHGLSQTDMIALSGAHTLGF SHCSRFADRIYRFNSRNRIDPTLNLQYAMQLRQMCPVNVDSRIAINMDPTTPRQFDNAYYQNLKNGKGLFTSDQILFTDSRSKGTVNLFASNNAAFQQAF VTAITKLGRVGVLTGNQGEIRRDCSRIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	0	1
					Potri.001G405600 [exp]	1.41	0.9830
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036700 [exp]	2.00	0.9802
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.012G069200 [exp]	2.23	0.9761
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	2.44	0.9802	Pt-PRX1.7
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	6.32	0.9762
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	8.48	0.9741	CYP87.2
AT2G01900			DNAse I-like superfamily prote...		Potri.008G139600 [exp]	8.48	0.9720
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	8.83	0.9665
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	10.24	0.9731
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	10.48	0.9720

Compare expression of checked genes

Potri.018G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.