Plant FIBer expression Database

Potri.018G090000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57340 72 / 7e-15 unknown protein
AT1G26620 56 / 2e-08 Plant protein of unknown function (DUF863) (.1)
AT1G13940 53 / 1e-07 Plant protein of unknown function (DUF863) (.1)
AT1G69360 52 / 3e-07 Plant protein of unknown function (DUF863) (.1)
AT5G67390 46 / 5e-06 unknown protein
AT5G07790 44 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G165500
[exp]
379 / 2e-133 AT5G57340 62 / 2e-11 unknown protein
Potri.008G092800
[exp]
56 / 1e-08 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1)
Potri.010G162000
[exp]
49 / 2e-06 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1)
Potri.006G262600
[exp]
48 / 4e-06 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1)
Potri.018G020800
[exp]
47 / 6e-06 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1)
Potri.007G053300
[exp]
44 / 3e-05 AT5G67390 100 / 3e-26 unknown protein
Potri.004G125900
[exp]
42 / 0.0005 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1)
Potri.005G145800
[exp]
40 / 0.0007 AT5G67390 87 / 1e-21 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011080
[exp]
56 / 3e-09 AT5G67390 91 / 7e-23 unknown protein
Lus10036807
[exp]
48 / 6e-06 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1)
Lus10037122
[exp]
46 / 2e-05 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1)
Lus10011531
[exp]
44 / 6e-05 AT5G67390 97 / 3e-25 unknown protein
Lus10019291
[exp]
44 / 7e-05 AT5G67390 95 / 2e-24 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G090000.2 pacid=42801450 polypeptide=Potri.018G090000.2.p locus=Potri.018G090000 ID=Potri.018G090000.2.v4.1 annot-version=v4.1
ATGGGAACCAAACTTGAATATGCCATCACTCTTCTAGCAACTTCACAAAATAGCAGTAGCATTAGTGTACATTGTATGGATGACCTGGAATATTTGCAGA
CCAGGGGTCTGGAAAAGAACCTTCAAGTTAGTGGGATAGACAAGTTCGGCAGCTCTATGGACAAGATGCCTGGCAAACACAACATAGACTTCATCAAGAA
GACAATGCAGTTGCATGAGGATATCTTCAAACAACAGGTAAGGGAACTCCATAGGCTGTACAGTGTTCAAAAGTTATTGATGGAGGAGTTGAAGAAAGGA
ATTAAACAAAACAGAAAGTACTGGACTCCAATAACTAGTTCAGATATTAACTGCTCTCAATTCGTTAACCGGCCTAATTCAGCAGCACAAACCACCTGTG
GTTATAGTTTCCATATTCAAAGCCTGAGGGAAGACCCAAATTCAAGAGAAAGAAGTGGTAGCTGTTCAGGTGAGACTGTGAAAATGTCACGGGGATTCGA
CCTTGAAAGGCCTGCAGAGGAAGATATATCAACTGGAGTTAGTGCTGTGGACGAGAACCAAGCAGGGCCAAGCGCTTATGCAACCCAAAAAAGAAAAATG
AGCATTGATGGATCTGATGAAGATAGTGAAGTGGAGCTGACATTAAGCATTGGAGGTAGCACAAGCAAGAAAATATCCAAAAACTACCAGACACTTGAGC
TTGATTCTTCTGCCTCGTTTAAATCTGAACGAAGAGAGGATCGCAGCACTCCAACAACCCCATTGAGCAGCTCTAGAGCAACATTCGATCAGGACAGAAA
GCGGCCGCAATGGCTTTTCCAAAGTTTAAGCATAAACAGGTCTTGA
AA sequence
>Potri.018G090000.2 pacid=42801450 polypeptide=Potri.018G090000.2.p locus=Potri.018G090000 ID=Potri.018G090000.2.v4.1 annot-version=v4.1
MGTKLEYAITLLATSQNSSSISVHCMDDLEYLQTRGLEKNLQVSGIDKFGSSMDKMPGKHNIDFIKKTMQLHEDIFKQQVRELHRLYSVQKLLMEELKKG
IKQNRKYWTPITSSDINCSQFVNRPNSAAQTTCGYSFHIQSLREDPNSRERSGSCSGETVKMSRGFDLERPAEEDISTGVSAVDENQAGPSAYATQKRKM
SIDGSDEDSEVELTLSIGGSTSKKISKNYQTLELDSSASFKSERREDRSTPTTPLSSSRATFDQDRKRPQWLFQSLSINRS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57340 unknown protein Potri.018G090000
[exp]
0 1
AT2G30230 unknown protein Potri.006G076500
[exp]
1.41 0.9182
AT5G57390 AP2_ERF PLT5, EMK, CHO1... PLETHORA 5, EMBRYOMAKER, CHOTT... Potri.018G091600
[exp]
3.46 0.8996
AT3G61220 SDR1 short-chain dehydrogenase/redu... Potri.002G156800
[exp]
3.74 0.9101
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.002G098300
[exp]
3.87 0.9053
AT3G14470 NB-ARC domain-containing disea... Potri.006G271800
[exp]
8.48 0.8820
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Potri.006G154500
[exp]
9.38 0.8596
AT3G61220 SDR1 short-chain dehydrogenase/redu... Potri.002G156300
[exp]
10.95 0.8698
AT5G45960 GDSL-like Lipase/Acylhydrolase... Potri.011G061900
[exp]
12.72 0.8769
AT3G02720 Class I glutamine amidotransfe... Potri.004G076200
[exp]
13.49 0.8709
AT1G28220 ATPUP3 purine permease 3 (.1) Potri.005G160300
[exp]
15.16 0.8745 PUP1.1

Potri.018G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.