Plant FIBer expression Database

Potri.018G090200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18969 97 / 2e-25 unknown protein
AT4G30180 67 / 4e-14 bHLH bHLH146 sequence-specific DNA binding transcription factors;transcription regulators (.1)
AT3G58850 49 / 9e-08 HLH2, PAR2 phy rapidly regulated 2 (.1)
AT2G43060 44 / 1e-05 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1)
AT2G42870 41 / 7e-05 PAR1 ,HLH1 HELIX-LOOP-HELIX 1, phy rapidly regulated 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G060100
[exp]
44 / 1e-05 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1)
Potri.014G118300
[exp]
43 / 2e-05 AT2G47270 62 / 2e-13 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1)
Potri.005G201500
[exp]
42 / 4e-05 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G090200.1 pacid=42800623 polypeptide=Potri.018G090200.1.p locus=Potri.018G090200 ID=Potri.018G090200.1.v4.1 annot-version=v4.1
ATGGAGGAACAGATGAGTGCTAAACGGAGATGTGTATATCCTCTTGAGCCAAGCTTGATAGGGCAAACAATGTTTGTTAGGAATTACGTGAGCCATTTGG
TTCCAGCTCTGAAGAAGATAAAAACATGCAGGCTAGTAGATGACAATTATGGCCATGATTCTGAGCTAGACGAAAGTGTGAGATATGAAGTAGACATGGC
ATTGGTGATGTCCGCCCCAGGGTTTGCTTGGAGTCGAGCCTTGAAAAGCAGGCTTCACAAGAATACGAATGCTGGTAGATTTCATGACTCTTCCATCCAT
CACCATGCCTCATTGAGACGTCTTTCAATGCATGGCCCAAGCATTCTGAAAAACGATGCGGATAATCATTCCTCACCAAATGTAACTTCTCAAAAGAGAG
CTTCCCCAAGCCCTAATGGTAAGCCCAAGATTAACAAGAGATTAAAGAGGGCCAGAAGCAAGAAAGAAGCTGCAGAGCAAAGTGAGGAAGAGCAGATCGG
AAGCCGGCTGGCCAGTCTAAGATCTCTCATGCCGGGTGGGAATGAGATGGGCGTTGATGAATTGTTTAGCGACATGGGAAGTTATATAACAAGTCTTGAG
ATGCAGGTGAACATTCTTCGTTGCCTAGTGGACTCACAGTATTAA
AA sequence
>Potri.018G090200.1 pacid=42800623 polypeptide=Potri.018G090200.1.p locus=Potri.018G090200 ID=Potri.018G090200.1.v4.1 annot-version=v4.1
MEEQMSAKRRCVYPLEPSLIGQTMFVRNYVSHLVPALKKIKTCRLVDDNYGHDSELDESVRYEVDMALVMSAPGFAWSRALKSRLHKNTNAGRFHDSSIH
HHASLRRLSMHGPSILKNDADNHSSPNVTSQKRASPSPNGKPKINKRLKRARSKKEAAEQSEEEQIGSRLASLRSLMPGGNEMGVDELFSDMGSYITSLE
MQVNILRCLVDSQY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G18969 unknown protein Potri.018G090200
[exp]
0 1
AT4G08910 unknown protein Potri.002G231400
[exp]
1.41 0.9969
AT5G18080 SAUR24 small auxin up RNA 24, SAUR-li... Potri.009G127100
[exp]
2.82 0.9967
AT3G22800 Leucine-rich repeat (LRR) fami... Potri.010G083100
[exp]
3.46 0.9946
AT5G39860 bHLH BNQ1, BHLH136, ... PACLOBUTRAZOL RESISTANCE1, BA... Potri.017G081300
[exp]
3.46 0.9961
AT4G38840 SAUR-like auxin-responsive pro... Potri.009G126900
[exp]
4.47 0.9952
AT2G42990 GDSL-like Lipase/Acylhydrolase... Potri.014G160200
[exp]
6.70 0.9934
AT2G10940 Bifunctional inhibitor/lipid-t... Potri.006G065500
[exp]
6.70 0.9950
AT4G19430 unknown protein Potri.003G105900
[exp]
7.07 0.9917
AT1G12570 Glucose-methanol-choline (GMC)... Potri.001G111500
[exp]
7.48 0.9940
AT3G05470 Actin-binding FH2 (formin homo... Potri.005G026300
[exp]
8.94 0.9937

Potri.018G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.