Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VHA2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18960 1560 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT4G30190 1556 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT5G57350 1526 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT1G80660 1489 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 1486 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G24520 1482 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT2G07560 1479 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G62670 1438 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1421 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 1270 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165900 [exp] 1688 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.006G275000 [exp] 1580 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1551 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 1494 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1490 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1486 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 1437 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1435 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G179800 [exp] 1396 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001631 [exp] 1617 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1532 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 1503 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10003259 [exp] 1430 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1430 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10026224 [exp] 1398 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042445 [exp] 1386 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10040166 [exp] 1343 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1342 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10019593 [exp] 1259 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G090300.1 pacid=42801291 polypeptide=Potri.018G090300.1.p locus=Potri.018G090300 ID=Potri.018G090300.1.v4.1 annot-version=v4.1 ATGGAGAAGGCCACTAGTCTTGAGGAGATCAAGAATGAGACTGTTGATCTGGAACGGATTCCGGTTGAGGAAGTGTTTGAGCAATTGAAATGCACCAAAG AAGGTTTGTCCTCAGAGGAAGGAGCCAGCAGGATTCAAATCTTTGGCCCCAACAAATTGGAAGAGAAAAAGGAAAGCAAGTTTCTCAAGTTTTTGGGGTT CATGTGGAACCCTCTATCATGGGTTATGGAAGCTGCAGCTATCATGGCTATTGCATTGGCAAATGGAAGTGGGAAGCCCCCGGATTGGCAAGACTTTGTC GGTATTATTTGCTTGCTTGTGATCAACTCTACCATTAGTTTCATTGAAGAAAACAATGCTGGCAATGCTGCGGCTGCACTCATGGCTGGCCTTGCTCCTA AAACCAAGGTGCTTAGGGATGGAAAGTGGACCGAGGAGGATGCTGCAATTCTGGTTCCAGGAGACATCATTAGTGTTAAATTGGGAGATATTATTCCTGC CGATGCCCGTCTTCTTGAGGGTGATCCTTTGAAGATTGATCAATCTGCCCTCACTGGGGAGTCACTTCCAGTAACTAAGCACCCTGGTGATGAAGTTTTC TCAGGTTCCACTTGCAAACAGGGAGAGATTGAGGCTGTTGTTATTGCTACTGGTGTCCACACCTTCTTTGGAAAGGCTGCGCATCTTGTGGACAGCACCA ACCAAGTTGGTCACTTCCAAAAGGTTCTCACTGCTATTGGGAACTTCTGTATTTGTTCCATAGCAGTTGGAATGGTTATCGAGCTCGTAGTCATGTACCC AATTCAGCACCGCAGGTACAGAGATGGAATTGACAATCTTTTGGTTCTATTGATTGGAGGAATCCCCATTGCTATGCCTACAGTCTTGTCTGTGACGATG GCTATTGGATCTCACAAGTTATCCCAACAAGGTGCTATCACTAAGCGTATGACTGCCATTGAAGAGATGGCAGGTATGGACGTACTCTGCAGTGACAAAA CTGGGACTTTAACCCTCAACAAACTGAGCGTTGACAAAAACTTGATTGAGGTTTTTGCGAAGGGTGTGGACAAAGATCATGTCGTCCTGCTTGCCGCCAG GGCCTCTAGAGTTGAAAATCAAGATGCCATTGATGCTGCCATGGTTGGAATGCTTGCTGATCCAAAGGAGGCAAGAGCTGGTATAAGAGAGGTGCACTTC CTTCCATTCAATCCTGTGGACAAAAGGACTGCTTTGACTTACATTGATGCTGATGGAAACTGGCATCGAGCAAGTAAAGGTGCTCCTGAGCAGATCCTCG ACCTATGCAATGCCAGGGAAGATGTTAAGAAGAAGACTCATTCTTGTATGGATAAGTTTGCCGAACGAGGGCTCCGATCATTGGCTGTTGCTAGACAGCA AGTGCCAGAGAAAAGTAAGGAAAGTCCAGGTGGTCCATGGGAGTTTGTTGGCTTGTTGAACCTCTTTGATCCTCCAAGACATGACAGTGCTGAAACCATC CGTAGAGCTCTCAATCTCGGTGTGAACGTCAAGATGATTACTGGTGATCAGCTTGCTATTGCAAAGGAGACAGGAAGAAGGCTTGGAATGGGAACAAACA TGTACCCTTCCGCTTCTTTACTTGGTCAGCATAAAGATGCAAGCATTGCTTCTCTTCCTGTAGAAGAGTTGATCGAGAAAGCAGATGGGTTTGCTGGCGT GTTTCCAGAGCACAAATATGAAATCGTGAAGAAGTTGCAAGAGAGCAAGCACATTGTCGGAATGACTGGTGATGGTGTTAATGATGCTCCTGCATTGAAG AAGGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCAAGAGGTGCATCTGACATTGTTCTAACGGAGCCTGGATTGAGTGTCATTATAAGTG CCGTTCTGACCAGTAGAGCTATTTTCCAAAGGATGAAGAACTACACTATCTATGCAGTCTCTATCACAATCCGTATTGTGTTTGGTTTCATGCTTATTGC TCTGATATGGAAGTACGACTTCTCTCCTTTCATGGTTTTGATTATTGCTATCCTAAATGACGGTACAATTATGACAATCTCAAAGGATAGAGTGAAGCCA TCACCCTTGCCTGATAGCTGGAAACTAAAAGAGATATTTGCCACTGGAATCGTACTCGGTGGTTACCTGGCTCTGATGACCGTGATATTCTTCTGGGCAG TGCATGATACTGATTTCTTTTCGAATAAATTTGGTGTCAGATCTTTGAGGCACCATGATGAAGAAATGATGGGGGCTTTGTACCTTCAAGTCAGTATTGT GAGCCAAGCTCTCATTTTCGTGACTCGTTCTCGCAGCTGGTCCTTTATTGAACGACCTGGTCTGCTACTACTGTCTGCTTTCATGCTTGCACAACTGGTG GCGACTCTGATTGCTGTTTATGCCAACTGGGGGTTTGCAAGGATCAAGGGAATTGGATGGGGTTGGGCTGGTGTCATCTGGATTTACAGTATCGTTTTTT ATTTCCCACTTGATATTATGAAGTTTGCTATCCGCTACATCCTAAGTGGAAAGGCTTGGCTCAATTTGCTGGATAACAAGACTGCCTTTACCACCAAGAA AGATTACGGTAAAGAAGAAAGAGAAGCTCAATGGGCTCATGCACAAAGGACCTTGCATGGGCTCCAACCACCTGAGACAGCTGGTATCTTCAATGAAAAG AGCAGCTACAGGGAGTTGTCTGAAATCGCAGAGCAGGCTAAGAGACGAGCAGAGGTTGCAAGGCTTCGGGAGCTTCACACACTCAAAGGGCATGTGGAGT CAGTTGTTAAACTCAAGGGCTTGGATATTGATACCATCCAGCAGCATTATACCGTGTAA
AA sequence Show only first row Show all	>Potri.018G090300.1 pacid=42801291 polypeptide=Potri.018G090300.1.p locus=Potri.018G090300 ID=Potri.018G090300.1.v4.1 annot-version=v4.1 MEKATSLEEIKNETVDLERIPVEEVFEQLKCTKEGLSSEEGASRIQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGSGKPPDWQDFV GIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVF SGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIELVVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTM AIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKDHVVLLAARASRVENQDAIDAAMVGMLADPKEARAGIREVHF LPFNPVDKRTALTYIDADGNWHRASKGAPEQILDLCNAREDVKKKTHSCMDKFAERGLRSLAVARQQVPEKSKESPGGPWEFVGLLNLFDPPRHDSAETI RRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDASIASLPVEELIEKADGFAGVFPEHKYEIVKKLQESKHIVGMTGDGVNDAPALK KADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKP SPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAVHDTDFFSNKFGVRSLRHHDEEMMGALYLQVSIVSQALIFVTRSRSWSFIERPGLLLLSAFMLAQLV ATLIAVYANWGFARIKGIGWGWAGVIWIYSIVFYFPLDIMKFAIRYILSGKAWLNLLDNKTAFTTKKDYGKEEREAQWAHAQRTLHGLQPPETAGIFNEK SSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	0	1	Pt-VHA2.2
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	2.44	0.7874
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	3.46	0.7540
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	5.29	0.7618	Pt-FRD3.1
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	9.48	0.7461
AT2G40460			Major facilitator superfamily ...		Potri.019G055800 [exp]	10.77	0.7527
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	10.95	0.7316
AT1G58030		CAT2	cationic amino acid transporte...		Potri.019G039700 [exp]	13.41	0.7183	Pt-CAT3.3,PtrCAT3
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	13.96	0.7481
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	14.00	0.7456
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	16.97	0.7453	STGA1.3

Compare expression of checked genes

Potri.018G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.