Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11710 945 / 0 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT3G13490 333 / 1e-106 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G30805 99 / 4e-24 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G26870 97 / 5e-21 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 88 / 5e-18 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G33760 70 / 3e-12 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090600 [exp] 1144 / 0 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.006G166000 [exp] 1111 / 0 AT3G11710 936 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.003G221600 [exp] 327 / 4e-104 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.006G085400 [exp] 87 / 1e-17 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.009G084300 [exp] 69 / 5e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 69 / 6e-12 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001625 [exp] 944 / 0 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001440 [exp] 942 / 0 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10013408 [exp] 324 / 4e-103 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10010317 [exp] 301 / 6e-94 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10037243 [exp] 62 / 8e-10 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10018862 [exp] 59 / 7e-09 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10035657 [exp] 47 / 5e-05 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Potri.018G090400.1 pacid=42800353 polypeptide=Potri.018G090400.1.p locus=Potri.018G090400 ID=Potri.018G090400.1.v4.1 annot-version=v4.1 ATGGAGGAGACCGACGCTTCTGCTCCCGCTGAGAAAACCACAAGCAAGAATGCGCTGAAGAAGGAATTGAAGAATAAGAAGAAAGAGGAAGAGAGACGCC TTAAAGAGGAAGACAAAGCTAGACAGGCTGCTGCCAAGGCCAGCACCCAGGTTCAGAAATCTGCAGCGGCAGCTGATGATGAAGATATGGACCCCACGCA ATACTATGAGAATAGGTTGAAATATCTCGATGCTCAGAAGGCAGAAGGGAAAAATATGTACCCTCATAAGTTTTTTGTTACACTGACCATCCCTGAATAT ATTGACAAGTATGGGGGGTTAAGCAATGGAGAGCATCTTGAGGATGTTTCTGTGTCTTTGGCTGGTCGAATAATGAGCAAAAGATCTTCCTCTTCAAAGC TGTTCTTTTATGATCTGCATGGTCTTGGTACTAAGGTCCAAGTGATGGCTGATGCAAGCAAGTCAGGCCTTGATGAAGCGGAGTTTTCTAAGCTCCATTC AAGTGTGAAGCGTGGTGATATTGTTGGTGTCACTGGATTTCCAGGAAAAACCAAAAGGGGAGAGTTGAGCATCTTTCCAACATCTTTTACGGTTTTATCT CATTGTTTGCACATGATGCCGAGGCAGAAAGCTGGCCCTGGCTCAGATGCTTGTGTGAAGAAATCTGAGGTTTGGGCCCCGGGAACAGTCAGGAACCCTG AGGCATATATTTTAAAAGATCAGGAAACACGTTATCGCCAACGATATCTAGATCTAATGTTGAATTTGGAGGTTCAACAAATATTCAAGACCAGATCTAA AATCATTAAATATGTGAAGAGCTTTCTTGACAATCTTGATTTCTTGGAGGTTGAAACACCAATGATGAATATGATTGCTGGCGGAGCTGCTGCCCGTCCA TTTGTAACCCATCATAATGACCTGAACATGAAACTGTACATGCGCATTGCACCCGAACTCTTTCTTAAAGAGTTAGTTGTTGGTGGACTCGACCGTGTTT ATGAAATCGGAAAACAATTTAGGAATGAGGGTATTGATTTGACACATAATCCAGAGTTCACAACTTGTGAGTTCTATATGGCTTATGCTGATTACAATGA CTTGATGGAACTCACTGAGAAAATGTTGAGCGGCATGGTCAAGGAACTTACAGGTGGCTACAAAATTAAATATCATGCCAACGGGCTTGACAAGGATCCA ATTGAGATTGACTTTACACCTCCTTTTAGACGAATTGACATGATTGAGGAGTTGGAGAAGATGGCCAACCTCAATATACCGAAGGACTTTTCAAGTGATG AAGCTACCAAATATCTTGTAGCTGCATGTGAGAGGTTTGAGGTCAAGTGCCCCCCTCCTCAAACGACAACTCGTTTGCTGGATAAACTGGTGGGGCATTT TCTAGAAGAGACTTGTGTAAACCCTGCCTTCATCATTAACCAACCTGAGATTATGAGTCCTTTGGCAAAGTGGCATAGATCGAAACCAGGCTTGACCGAA CGCTTTGAATTGTTTGTCAACAAGCATGAGCTTTGCAATGCATACACTGAATTGAATGACCCTGTTGTACAACGCGAAAGATTTGAGTCACAACTCAAGG ATCGACAATCAGGTGATGATGAAGCAATGGCTTTCGACGAAACATTCTGTACGGCACTTGAATATGGATTGCCTCCTACTGGTGGATGGGGAATGGGTAT TGATCGGTTAGCTATGTTGTTAACTGATTCACAGAACATAAAGGAGGTGCTTCTCTTCCCTGCCATGAAGCCTCAGGATGAACCGTCTGCTAAAGCTACT TAG
AA sequence Show only first row Show all	>Potri.018G090400.1 pacid=42800353 polypeptide=Potri.018G090400.1.p locus=Potri.018G090400 ID=Potri.018G090400.1.v4.1 annot-version=v4.1 MEETDASAPAEKTTSKNALKKELKNKKKEEERRLKEEDKARQAAAKASTQVQKSAAAADDEDMDPTQYYENRLKYLDAQKAEGKNMYPHKFFVTLTIPEY IDKYGGLSNGEHLEDVSVSLAGRIMSKRSSSSKLFFYDLHGLGTKVQVMADASKSGLDEAEFSKLHSSVKRGDIVGVTGFPGKTKRGELSIFPTSFTVLS HCLHMMPRQKAGPGSDACVKKSEVWAPGTVRNPEAYILKDQETRYRQRYLDLMLNLEVQQIFKTRSKIIKYVKSFLDNLDFLEVETPMMNMIAGGAAARP FVTHHNDLNMKLYMRIAPELFLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMELTEKMLSGMVKELTGGYKIKYHANGLDKDP IEIDFTPPFRRIDMIEELEKMANLNIPKDFSSDEATKYLVAACERFEVKCPPPQTTTRLLDKLVGHFLEETCVNPAFIINQPEIMSPLAKWHRSKPGLTE RFELFVNKHELCNAYTELNDPVVQRERFESQLKDRQSGDDEAMAFDETFCTALEYGLPPTGGWGMGIDRLAMLLTDSQNIKEVLLFPAMKPQDEPSAKAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090400 [exp]	0	1
AT3G52040			unknown protein		Potri.009G056800 [exp]	1.00	0.9024
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.017G014400 [exp]	1.41	0.8738
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.003G063200 [exp]	3.00	0.8354
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	5.65	0.8534	ARR12.2
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.006G146400 [exp]	5.91	0.8522
AT3G63130		ATRANGAP1, RANG...	RAN GTPASE-ACTIVATING PROTEIN ...		Potri.002G052900 [exp]	7.00	0.8387	Pt-RANGAP1.2
AT4G29890			choline monooxygenase, putativ...		Potri.006G072800 [exp]	10.72	0.8117
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.003G003900 [exp]	12.36	0.7929
AT5G39990			Core-2/I-branching beta-1,6-N-...		Potri.009G003300 [exp]	12.40	0.8264
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.004G094100 [exp]	12.64	0.8029

Compare expression of checked genes

Potri.018G090400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.