Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57360 1041 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 910 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 794 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT1G51550 117 / 6e-28 Kelch repeat-containing F-box family protein (.1) AT5G58140 93 / 1e-19 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 89 / 4e-18 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G36360 84 / 9e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT2G27210 83 / 3e-16 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT1G08420 83 / 3e-16 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT1G18610 79 / 3e-15 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166300 [exp] 1115 / 0 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G105700 [exp] 811 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 811 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G252200 [exp] 145 / 1e-37 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 140 / 8e-36 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.004G209700 [exp] 99 / 4e-21 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 96 / 2e-20 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 89 / 3e-18 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.012G062100 [exp] 85 / 4e-17 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015531 [exp] 1066 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 1050 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 1049 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019169 [exp] 791 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10020003 [exp] 777 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10029002 [exp] 772 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 748 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 744 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10034827 [exp] 122 / 2e-29 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 119 / 1e-28 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.018G090800.1 pacid=42801322 polypeptide=Potri.018G090800.1.p locus=Potri.018G090800 ID=Potri.018G090800.1.v4.1 annot-version=v4.1 ATGGAGTGGGATAGCGATTCGGATCTGAGCGGGGAGGAAGATGAGGAGGGATTCATGTTAAACGACGGAGGAGGAGGTCCTTTGCCTTTTCCTGTCGAGA ATTTGCTGCAAACTGCTCCTTGTGGATTTGTTGTCACTGATGCTCTTGAACCTGACCATCCTCTTATTTATGTCAACACTGTTTTTGAGATGGTTACTGG CTATCGAGCTGAGGAAGTTCTTGGCCGTAATTGCCGTTTCTTGCAATGCAGAGGACCATTTGCTAAACGAAGGCATCCATTGGTCGACTCCACAGTGGTT TCGGAAATAAGAAGATGCCTCGAAGAGGGCATTGAATTCCAAGGTGAGTTGTTAAACTTCAGAAAAGATGGATCTCCACTGATGAACAGGCTGCGGCTTA CTCCTATATATGGGGAGGATGACACAATTACTCATGTTATTGGAATCCAGTTCTTCACCGAAGCTAATATTGATCTAGGTCCCGTGCCTGGTTATTCAGT AAAGGAGTCTTCAAAATTGGCTGATAAGTTTCGTTCTGGTTTTTCCACCTATCGTCCAATCCCAGTAGGTGATCGTAATGTTAGCCGTGGCATCTGTGGG ATACTGCAATTGAGTGATGAGGTACTGTCTCTTAAGATACTTTCACGTTTGACTCCAAGGGATATTGCTTCAATTGGTTCTGTCTGCAGACAACTCTATG AGCTGACAAAGAATGAGGATCTCTGGAGAATGGTCTGTCAGAATGCTTGGGGTAGTGAAACAACTCGAGTTCTAGAGACTGTGCCTGGTGCAAAGAGACT TGGCTGGGGTCGGCTTGCTAGGGAATTGACAACTCTTGAAGCAGCAACATGGAGAAAGCTAACCGTTGGAGGTTCTGTTGAACCCTCAAGGTGCAATTTC AGTGCTTGTGCAGTTGGTAATCGAGTTGTACTTTTTGGTGGGGAGGGTGTTAACATGCAGCCAATGAATGATACCTTTGTCCTGGATCTGAACTCCAGTA ACCCAGAGTGGCAACATGTCCATGTGAGCTCCCCTCCTCCTGGTCGGTGGGGACATACACTTTCTTGTGTTAATGGGTCTCATTTGGTGGTTTTTGGAGG TTGTGGAAGGCAAGGTCTATTGAATGATGTCTTTATTTTGGATTTGGATGCCAAGCCTCCGACTTGGCGTGAGATTTCTGGATTGGCCCCTCCACTTCCA CGATCATGGCACAGTTCCTGCACCCTTGATGGCACTAAGTTGATTGTCTCTGGTGGGTGTGCAGATTCTGGAGTACTTCTTAGTGACACATTTCTGCTTG ATTTGTCAATGGAGAAGCCTATCTGGAGGGAGATACCAGTTTCATGGACCCCACCATCTCGGCTAGGTCACACTCTCTCAGTTTATGGAGGAAGAAAAAT ATTGATGTTCGGGGGTTTGGCTAAGAGCGGTCCCCTTCGGTTCCGCTCCAGTGACGTGTTTACTATGGATCTAAGTGAGGAGGAACCTTGTTGGAGATGT GTAACAGGGAGTGGAATGCCTGGTGCTGGAAACCCTAGCGGCATAGCTCCTCCACCTAGACTTGATCATGTAGCTGTGAGCCTTCCTGGTGGTAGAATCC TGATCTTTGGTGGCTCTGTTGCAGGTCTTCACTCTGCCTCGCAGCTTTATCTCCTTGATCCTACTGACGAGAAACCTACATGGAGGATTCTAAATGTACC CGGGCGACCTCCAAGATTTGCTTGGGGGCACAGTACCTGTGTTGTTGGAGGGACAAGGGCTATAGTCCTTGGTGGTCAAACTGGGGAGGAGTGGATGCTG AGTGAGCTCCATGAACTGTCTTTGGCAAGTTCAGCCACCTAA
AA sequence Show only first row Show all	>Potri.018G090800.1 pacid=42801322 polypeptide=Potri.018G090800.1.p locus=Potri.018G090800 ID=Potri.018G090800.1.v4.1 annot-version=v4.1 MEWDSDSDLSGEEDEEGFMLNDGGGGPLPFPVENLLQTAPCGFVVTDALEPDHPLIYVNTVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVV SEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIYGEDDTITHVIGIQFFTEANIDLGPVPGYSVKESSKLADKFRSGFSTYRPIPVGDRNVSRGICG ILQLSDEVLSLKILSRLTPRDIASIGSVCRQLYELTKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAATWRKLTVGGSVEPSRCNF SACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVHVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFILDLDAKPPTWREISGLAPPLP RSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVSWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRC VTGSGMPGAGNPSGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYLLDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWML SELHELSLASSAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.018G090800 [exp]	0	1
AT4G29070			Phospholipase A2 family protei...		Potri.001G275300 [exp]	1.41	0.9538
AT4G02920			unknown protein		Potri.014G138200 [exp]	2.00	0.9345
AT5G35690			unknown protein		Potri.014G160400 [exp]	6.08	0.9055
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	7.93	0.9229
AT5G03560			Tetratricopeptide repeat (TPR)...		Potri.016G096900 [exp]	8.48	0.9281
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	13.03	0.9126
AT4G35760			NAD(P)H dehydrogenase (quinone...		Potri.005G106500 [exp]	15.16	0.9205
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	16.55	0.8841
AT5G03555			permease, cytosine/purines, ur...		Potri.006G119500 [exp]	17.32	0.9319
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Potri.005G095300 [exp]	17.74	0.9289	Pt-MST2.1

Compare expression of checked genes

Potri.018G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.