Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18890 471 / 3e-166 Protein kinase superfamily protein (.1.2) AT5G57670 358 / 1e-119 Protein kinase superfamily protein (.2) AT5G65530 347 / 1e-116 Protein kinase superfamily protein (.1) AT5G18910 345 / 4e-115 Protein kinase superfamily protein (.1) AT3G05140 339 / 1e-113 RBK2 ROP binding protein kinases 2 (.1) AT5G10520 333 / 3e-111 RBK1 ROP binding protein kinases 1 (.1) AT5G35960 327 / 3e-109 Protein kinase family protein (.1) AT4G35030 242 / 9e-77 Protein kinase superfamily protein (.1.2.3) AT1G21590 249 / 1e-75 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G26150 248 / 3e-75 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166600 [exp] 602 / 0 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 398 / 1e-134 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 392 / 2e-132 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 340 / 2e-113 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 332 / 2e-111 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 335 / 1e-110 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G011700 [exp] 329 / 1e-109 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.005G067000 [exp] 273 / 5e-85 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 270 / 8e-84 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006957 [exp] 467 / 2e-165 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 389 / 8e-131 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10008192 [exp] 333 / 2e-111 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10012776 [exp] 334 / 2e-109 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 335 / 3e-109 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10035949 [exp] 328 / 8e-109 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 325 / 1e-107 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10015516 [exp] 305 / 1e-98 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2) Lus10012727 [exp] 298 / 1e-95 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10025713 [exp] 275 / 6e-89 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G091200.1 pacid=42800447 polypeptide=Potri.018G091200.1.p locus=Potri.018G091200 ID=Potri.018G091200.1.v4.1 annot-version=v4.1 ATGAAGTACATAAGAACCAACAGCTTGAGAAGACTTTTCTCATTGAAAAGACGAAGTCTTGAGGATATAGTTTACACCGATGAAGAAGGAAAAAACAATG AAAACTCCAAGATTGTTCAGGAACCGCAGCATTCTCCAAGACCCTCTTGGAAATGCTTTTCTTTTGAAGAAATATCTGATGCCACCAATGGCTTTAGCCC AGAGAATCTGGTGGGGAGAGGAGGCTATGCAGAGGTGTACAAAGGGGTGTTAGGTGATGGAGAGGAGATTGCAATAAAGAGGCTAACAAAAGCTTGTAGG GATGAGAGGAAAGAGAAGGAGTTCTTAACAGAGATTGGGACAATTGGTCATGTCTGTCATCCTAACGTCTTGTCCTTGTTGGGTTGTTGCACAGACAATG GGCTTTATCTTATCTTTCATTTCTCCTCCAGAGGCTCTGTTGCTTCCCTTCTTCATGATGAGAATTTGCCAGTGATGGATTGGAAAATAAGGTACAAGAT TGCCATTGGGACTGCTAGAGGCCTCCATTACTTGCATAAGGGGTGCCAAAGAAGGATAATTCACCGTGACATTAAATCTTCAAATATTCTCCTGACAGCA GATTTTGAGCCATTGATATCTGATTTTGGATTAGCAAAATGGCTCCCATCTCAATGGACTCACCATTCAATCGCTCCGATTGAAGGAACATTTGGGCACT TAGCGCCCGAGTACTATATGCATGGAATAGTGGATGAGAAAACAGATGTGTTTGCGTTTGGAGTCTTTTTGCTGGAGATCATTTCTGGCAGGAAACCTGT TGATGGTTCTCACCAAAGCATACATGTATGGGCTAAACCAATATTGAACCAAGGAGAGATTGAAAGGCTGGTGGATCCAAGGCTTGGAGGGACGTATGAT GCTACACAGCAGAAAAGACTTGGCTTTGCTGCATCCCTTTGCATACGGGCATCTTCAACATGGCGACCTACAATGAGTGAGGTATTGGAAGTAATGCTAG AAGAGGAGATGGATAAGGAAAGGTGGAAGATACCCAAGGAAGAAGAGCAAGAAGAGTTCTGGGGCTTTGAAGATCTAGAACATGAGTGTGACAGTTCCTT CTCAATTTCTCCACAAGATTCAATCTCTACAAGAAGCACTATGACCATTATAGATTAG
AA sequence Show only first row Show all	>Potri.018G091200.1 pacid=42800447 polypeptide=Potri.018G091200.1.p locus=Potri.018G091200 ID=Potri.018G091200.1.v4.1 annot-version=v4.1 MKYIRTNSLRRLFSLKRRSLEDIVYTDEEGKNNENSKIVQEPQHSPRPSWKCFSFEEISDATNGFSPENLVGRGGYAEVYKGVLGDGEEIAIKRLTKACR DERKEKEFLTEIGTIGHVCHPNVLSLLGCCTDNGLYLIFHFSSRGSVASLLHDENLPVMDWKIRYKIAIGTARGLHYLHKGCQRRIIHRDIKSSNILLTA DFEPLISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYMHGIVDEKTDVFAFGVFLLEIISGRKPVDGSHQSIHVWAKPILNQGEIERLVDPRLGGTYD ATQQKRLGFAASLCIRASSTWRPTMSEVLEVMLEEEMDKERWKIPKEEEQEEFWGFEDLEHECDSSFSISPQDSISTRSTMTIID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18890			Protein kinase superfamily pro...		Potri.018G091200 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	3.87	0.7307
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Potri.005G179300 [exp]	4.69	0.6692	ALDH3.3
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	5.47	0.7533
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Potri.001G233100 [exp]	5.47	0.6723
AT4G18260			Cytochrome b561/ferric reducta...		Potri.011G080400 [exp]	9.05	0.7423
AT1G73340			Cytochrome P450 superfamily pr...		Potri.017G154600 [exp]	14.42	0.7296
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	16.61	0.6687
					Potri.013G104350 [exp]	16.85	0.6050
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Potri.006G079200 [exp]	21.09	0.7043
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.002G209700 [exp]	22.27	0.6862

Compare expression of checked genes

Potri.018G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.