Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38410 183 / 2e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) AT1G67090 182 / 2e-59 RBCS1A ribulose bisphosphate carboxylase small chain 1A (.1.2) AT5G38420 182 / 3e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38430 182 / 5e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G100000 [exp] 179 / 9e-58 AT1G67090 286 / 3e-100 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.017G114600 [exp] 174 / 6e-56 AT1G67090 292 / 2e-102 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.006G167901 [exp] 127 / 4e-38 AT5G38410 0 / 1 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005093 [exp] 236 / 2e-80 AT5G38420 186 / 3e-60 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10034357 [exp] 224 / 9e-76 AT1G67090 182 / 7e-59 ribulose bisphosphate carboxylase small chain 1A (.1.2) Lus10028471 [exp] 194 / 5e-64 AT5G38420 265 / 1e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10009172 [exp] 192 / 3e-63 AT5G38420 264 / 2e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10033558 [exp] 190 / 4e-62 AT5G38410 272 / 1e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10017597 [exp] 189 / 4e-62 AT5G38410 271 / 2e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00101 [poplar] [flax] RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Representative CDS sequence Show only first row Show all	>Potri.018G091401.1 pacid=42801215 polypeptide=Potri.018G091401.1.p locus=Potri.018G091401 ID=Potri.018G091401.1.v4.1 annot-version=v4.1 ATGTCTGCCGGAATCTTTGCAGCTTCTGCAGTGGCTGCTCCTGGTTATCATGGCTTAAGAGCACTCCCCACAAAGCAGCCGTTTGCTACCAAGAATTCTG TTGCACGGAGCAGCAGAACTGTGTCCAATGGCTCTAAGACTTTTTGTATGAAGACATGGAACCCAATCAACAACAAAAAGTTTGAGGCTCTGTCCTACCT GCCTCCTCTTTCTGAAGATTCAATTGCGAAGGAGATTGATTACATGATGAAAAAAGGATGGATCCCTTGCCTGGAATTCGACGAGGTGGGAAGCGTACGC AGGGAGCACAGCAGGATGCCAGGATACTACGATGGAAGGTACTGGACATTGTGGAAGCTCCCCATGTTTGGATGCACCGACTCCTCTCAAGTCCTCGAAG AAATCCATGAGTGCAAAAAGGCATATCCAGATGCTTACATCCGTTGCCTGGCATTCGACAACAAGCACCAGGGTCAGTGCATGGCTTTTGTCATTCAAAA ACCTGGCAACTGA
AA sequence Show only first row Show all	>Potri.018G091401.1 pacid=42801215 polypeptide=Potri.018G091401.1.p locus=Potri.018G091401 ID=Potri.018G091401.1.v4.1 annot-version=v4.1 MSAGIFAASAVAAPGYHGLRALPTKQPFATKNSVARSSRTVSNGSKTFCMKTWNPINNKKFEALSYLPPLSEDSIAKEIDYMMKKGWIPCLEFDEVGSVR REHSRMPGYYDGRYWTLWKLPMFGCTDSSQVLEEIHECKKAYPDAYIRCLAFDNKHQGQCMAFVIQKPGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38410			Ribulose bisphosphate carboxyl...		Potri.018G091401 [exp]	0	1
AT4G33070			Thiamine pyrophosphate depende...		Potri.004G054100 [exp]	2.00	0.7148	PDC1.3
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037200 [exp]	3.46	0.6984
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.001G092700 [exp]	4.24	0.6837
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Potri.010G117900 [exp]	4.89	0.6904
AT3G13000			Protein of unknown function, D...		Potri.007G003900 [exp]	6.48	0.7558
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G037900 [exp]	11.57	0.7369
AT5G27360		SFP2	Major facilitator superfamily ...		Potri.013G027800 [exp]	15.23	0.6224
AT5G03620			Subtilisin-like serine endopep...		Potri.006G114500 [exp]	21.97	0.6945
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	22.71	0.6134
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.008G072800 [exp]	22.91	0.7202

Compare expression of checked genes

Potri.018G091401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.