Plant FIBer expression Database

Potri.018G091700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02920 246 / 2e-81 ATRPA32B Replication protein A, subunit RPA32 (.1.2)
AT2G24490 184 / 5e-57 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
AT1G07130 45 / 1e-05 STN1, ATSTN1 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G167600
[exp]
460 / 7e-166 AT3G02920 219 / 9e-71 Replication protein A, subunit RPA32 (.1.2)
Potri.006G275700
[exp]
210 / 3e-67 AT2G24490 251 / 3e-83 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Potri.006G272000
[exp]
57 / 9e-11 AT2G24490 73 / 4e-17 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Potri.005G212900
[exp]
44 / 3e-05 AT1G07130 182 / 1e-59 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019976
[exp]
313 / 2e-107 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2)
Lus10015505
[exp]
265 / 3e-87 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2)
Lus10026954
[exp]
196 / 1e-61 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Lus10020154
[exp]
181 / 7e-56 AT2G24490 243 / 3e-80 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Lus10026953
[exp]
117 / 9e-30 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
Lus10042621
[exp]
40 / 0.0004 AT1G07130 169 / 2e-54 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF01336 tRNA_anti-codon OB-fold nucleic acid binding domain
CL0123 HTH PF08784 RPA_C Replication protein A C terminal
Representative CDS sequence
>Potri.018G091700.1 pacid=42800619 polypeptide=Potri.018G091700.1.p locus=Potri.018G091700 ID=Potri.018G091700.1.v4.1 annot-version=v4.1
ATGTATGGGAGCAGCCAATTCGATGGAAGCGCCGCAGCCTTCATGGGCGGCGGATTCATGCCTACTCAAACCGCTCACCCTCCTTCTGATTCCTCCTCCA
TCTCCAAAAATCGGGAGGCGCGGTGCTTGTTTCCGCTGACTGTGAAGCAGATAAGCAACCTAGCAAGTAATAATGAATCTAATTTCATCATTGATGGTGC
TGAAGTTAACAATGTTACAATTGTGGGGAGGGTATCCCACAAGGAAGACAAGGCCAGCGAGTACACTTTTTTAGTTGATGATGGAACTGGACAGATTGAA
TGTACCAAATGGGTTCAAGAAAGCTTAGATACAGAACAAATGGGGGAAATCTTAGTTGGCATGTATGTTCGTGTTCATGGACACTTGAGAGGGCTGCAAG
GCAGAAGGTTCTTGAATGTCTTCTCCATTAGGCCTGTTACTGACTTTAATGAGATTCCAGGCCATTTCATTGAGTGCATATATGTCCACTTCTACAATAC
CAGGTTACAGGGTGTCACTTCTCAGCCCCCAGTAGCAAATTCAACAAGTATCCCTTTAAAGGGATACCAAACTGCCCCTCCATATCAATCTTCTGTGTAT
TCCAGTGCTGATGGACTGAACAATGTTAGTCAGATGATATTAAATTTCTTGCAGCAACCTGCATATCTGAACACCGAGGGAGCTCACTACGATGTCATTG
CCCGTCAGCTAAACATTCCAATGAATAAGCTCAAGGAAGAACTACAGATGCTGGTTGACAATGGCCTCGTTTATACAACAATCAACGATGATTACTATAA
GTCTACTGTTAATGCCTGA
AA sequence
>Potri.018G091700.1 pacid=42800619 polypeptide=Potri.018G091700.1.p locus=Potri.018G091700 ID=Potri.018G091700.1.v4.1 annot-version=v4.1
MYGSSQFDGSAAAFMGGGFMPTQTAHPPSDSSSISKNREARCLFPLTVKQISNLASNNESNFIIDGAEVNNVTIVGRVSHKEDKASEYTFLVDDGTGQIE
CTKWVQESLDTEQMGEILVGMYVRVHGHLRGLQGRRFLNVFSIRPVTDFNEIPGHFIECIYVHFYNTRLQGVTSQPPVANSTSIPLKGYQTAPPYQSSVY
SSADGLNNVSQMILNFLQQPAYLNTEGAHYDVIARQLNIPMNKLKEELQMLVDNGLVYTTINDDYYKSTVNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02920 ATRPA32B Replication protein A, subunit... Potri.018G091700
[exp]
0 1
AT3G49430 SRP34A, SR34a, ... Serine/Arginine-Rich Protein S... Potri.012G021800
[exp]
6.92 0.7065
AT5G42820 C3HZnF ATU2AF35B Zinc finger C-x8-C-x5-C-x3-H t... Potri.006G116700
[exp]
11.66 0.6395
AT5G55000 FIP2 potassium channel tetramerisat... Potri.019G038400
[exp]
11.87 0.7267
AT5G05950 MEE60 maternal effect embryo arrest ... Potri.010G196100
[exp]
15.19 0.6163
AT1G33970 P-loop containing nucleoside t... Potri.019G077300
[exp]
18.65 0.7038
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Potri.014G018000
[exp]
22.75 0.6463
AT5G52200 AtI-2 inhibitor-2, phosphoprotein ph... Potri.015G140500
[exp]
31.74 0.6235
AT1G20050 HYD1 HYDRA1, C-8,7 sterol isomerase... Potri.001G070301
[exp]
31.87 0.6658
AT3G01435 Expressed protein (.1) Potri.004G001600
[exp]
43.37 0.6622
AT2G06005 FIP1 FRIGIDA interacting protein 1 ... Potri.018G056500
[exp]
47.49 0.6473

Potri.018G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.